dillonl / graphiteLinks
Graphite - Graph-based variant adjudication
☆28Updated 4 years ago
Alternatives and similar repositories for graphite
Users that are interested in graphite are comparing it to the libraries listed below
Sorting:
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆57Updated 3 weeks ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 9 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆33Updated 2 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆35Updated 2 years ago
- ☆26Updated 4 years ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- ☆34Updated 5 years ago
- Structural variant (SV) analysis tools☆38Updated last year
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆18Updated 7 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated last month
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- ☆23Updated 4 months ago
- de Bruijn Graph-based read aligner☆33Updated 7 years ago
- a pileup library that embraces the huge☆43Updated 5 years ago