dillonl / graphiteLinks
Graphite - Graph-based variant adjudication
☆28Updated 4 years ago
Alternatives and similar repositories for graphite
Users that are interested in graphite are comparing it to the libraries listed below
Sorting:
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated this week
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆35Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆33Updated 2 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Structural variant (SV) analysis tools☆36Updated last year
- ☆34Updated 5 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆17Updated 7 years ago
- ☆35Updated 4 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- ☆26Updated 4 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- ☆51Updated 6 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- de Bruijn Graph-based read aligner☆33Updated 7 years ago
- Detect novel (and reference) STR expansions from short-read data☆67Updated 2 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Error correction and variant calling algorithm for nanopore sequencing☆26Updated 9 years ago
- ☆23Updated 3 months ago