ryanlayer / giggleLinks
Interval data structure
☆235Updated last year
Alternatives and similar repositories for giggle
Users that are interested in giggle are comparing it to the libraries listed below
Sorting:
- Microassembly based somatic variant caller for NGS data☆154Updated 3 years ago
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 3 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆137Updated 3 years ago
- Lollipop-style mutation diagrams for annotating genetic variations.☆196Updated last year
- Learning the Sequence Alignment/Map format☆112Updated 5 months ago
- Relevant papers for CNV and SV approaches☆94Updated last year
- ☆82Updated 7 years ago
- SV detection from paired end reads mapping☆118Updated 6 years ago
- Software program for checking sample matching for NGS data☆137Updated last year
- Finder of Somatic Fusion Genes in RNA-seq data☆148Updated 4 months ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆228Updated last year
- VarDict☆201Updated 2 years ago
- NEAT read simulation tools☆101Updated 3 years ago
- Genomic Interactive Visualization Engine☆146Updated 3 years ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆176Updated last year
- Learning the Variant Call Format☆147Updated 5 months ago
- Copy number calling and variant classification using targeted short read sequencing☆141Updated 5 months ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆247Updated last year
- Match up paired end fastq files quickly and efficiently.☆153Updated last year
- phasing and Allele Specific Expression from RNA-seq☆117Updated last year
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆110Updated 4 years ago
- ABRA2☆95Updated 3 years ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆136Updated last year
- ☆189Updated 2 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Tools for processing and analyzing structural variants.☆156Updated 3 years ago
- BEDOPS: high-performance genomic feature operations☆357Updated 9 months ago
- A tool set for short variant discovery in genetic sequence data.☆204Updated 4 years ago
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆145Updated 6 months ago
- Biopieces is a bioinformatic framework of tools easily used and easily created.☆144Updated 7 years ago