ryanlayer / giggleLinks
Interval data structure
☆233Updated 6 months ago
Alternatives and similar repositories for giggle
Users that are interested in giggle are comparing it to the libraries listed below
Sorting:
- structural variant calling and genotyping with existing tools, but, smoothly.☆253Updated last year
- GATK RNA-Seq Variant Calling in Nextflow☆133Updated 2 years ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆171Updated last year
- A tool set for short variant discovery in genetic sequence data.☆197Updated 4 years ago
- Lollipop-style mutation diagrams for annotating genetic variations.☆191Updated 9 months ago
- Population-scale genotyping using pangenome graphs☆185Updated 5 months ago
- SV detection from paired end reads mapping☆117Updated 5 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 3 years ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆221Updated 9 months ago
- Structural variation and indel detection by local assembly☆246Updated last week
- Annotation and Ranking of Structural Variation☆260Updated 3 months ago
- ☆82Updated 6 years ago
- BEDOPS: high-performance genomic feature operations☆340Updated last month
- tools for adding mutations to existing .bam files, used for testing mutation callers☆241Updated 8 months ago
- Fast alignment and preprocessing of chromatin profiles☆202Updated last week
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆230Updated last month
- Bayesian genotyper for structural variants☆134Updated 4 years ago
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- Tools for processing and analyzing structural variants.☆152Updated 3 years ago
- Graph realignment tools for structural variants☆157Updated 2 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆377Updated last year
- Copy number calling and variant classification using targeted short read sequencing☆136Updated 2 months ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆219Updated last year
- Workflows for germline short variant discovery with GATK4☆137Updated 4 years ago
- ABRA2☆92Updated 2 years ago
- software tools for haplotype assembly from sequence data☆219Updated 4 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆162Updated 10 months ago
- Whole Genome Simulator for Next-Generation Sequencing☆97Updated 6 months ago
- VarDict☆198Updated last year
- phasing and Allele Specific Expression from RNA-seq☆115Updated 11 months ago