Interval data structure
☆236Mar 18, 2026Updated last month
Alternatives and similar repositories for giggle
Users that are interested in giggle are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Structural Variant Index☆76Dec 13, 2024Updated last year
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- ☆14Aug 30, 2025Updated 7 months ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆15Feb 13, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- annotate a VCF with other VCFs/BEDs/tabixed files☆401Aug 30, 2025Updated 7 months ago
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 8 years ago
- A C library for handling bigWig files☆81Jan 17, 2025Updated last year
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Apr 12, 2024Updated 2 years ago
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆148Feb 17, 2026Updated 2 months ago
- Stupid Simple Structural Variant View☆25Nov 21, 2016Updated 9 years ago
- Graphite - Graph-based variant adjudication☆28Feb 9, 2021Updated 5 years ago
- nim wrapper for htslib for parsing genomics data files☆158Mar 31, 2026Updated 3 weeks ago
- Locus Overlap Analysis: Enrichment of Genomic Ranges☆80Sep 1, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆133Oct 14, 2025Updated 6 months ago
- useful command-line tools written to showcase hts-nim☆50Nov 10, 2020Updated 5 years ago
- extract SV signal from a BAM☆11Jul 26, 2018Updated 7 years ago
- ChIP-seq DC and QC Pipeline☆36Mar 19, 2021Updated 5 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆34Aug 1, 2024Updated last year
- RUFUS k-mer based genomic variant detection☆54Jan 5, 2026Updated 3 months ago
- XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.☆13Jan 19, 2023Updated 3 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Dec 14, 2020Updated 5 years ago
- A tool set for short variant discovery in genetic sequence data.☆205May 4, 2021Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- genetic variant expressions, annotation, and filtering for great good.☆274Dec 15, 2025Updated 4 months ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆225Sep 18, 2025Updated 7 months ago
- Squeakr: An Exact and Approximate k -mer Counting System☆86Feb 23, 2025Updated last year
- Rapid and robust analysis of RNA-Seq experiments.☆32Apr 16, 2016Updated 10 years ago
- List of gene lists for genomic analyses.☆228Jun 24, 2022Updated 3 years ago
- sort genomic data☆36Nov 7, 2025Updated 5 months ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 7 years ago
- cython + htslib == fast VCF and BCF processing☆440Feb 23, 2026Updated 2 months ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Apr 20, 2020Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Structural variation and indel detection by local assembly☆255Updated this week
- The D4 Quantitative Data Format☆172Nov 28, 2025Updated 5 months ago
- Flexible genotype query among 30,000+ samples whole-genome☆94Sep 4, 2019Updated 6 years ago
- A succinct colored dBG representation☆12Sep 11, 2018Updated 7 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- python wrapper to dpryan79's bigwig library using cffi☆19May 13, 2016Updated 9 years ago
- vcf file manipulation☆22Jul 9, 2015Updated 10 years ago