genetic distance plotting for recombination events analysis
☆10Feb 25, 2026Updated last week
Alternatives and similar repositories for recan
Users that are interested in recan are comparing it to the libraries listed below
Sorting:
- Python Programming for Biologists☆12Dec 3, 2025Updated 3 months ago
- ☆10Aug 29, 2012Updated 13 years ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- ☆14Jun 30, 2021Updated 4 years ago
- Welcome to the StrainHub Repo - Files and Data - StrainHub Online:☆17Jun 26, 2022Updated 3 years ago
- ☆20Mar 31, 2021Updated 4 years ago
- tools in python and R for analyzing biological count data, especially from single cell RNAseq☆22Feb 1, 2024Updated 2 years ago
- ☆40Sep 14, 2016Updated 9 years ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Jun 28, 2021Updated 4 years ago
- exploring viral genome assembly with variation graph tools☆20May 18, 2020Updated 5 years ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆21Nov 6, 2023Updated 2 years ago
- Quasitools is a collection of tools for analysing viral quasispecies data.☆27Nov 25, 2021Updated 4 years ago
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆24Feb 22, 2026Updated last week
- Basestack is a platform for rapid and real time analysis of NGS data. It provides a executable application that connects standard bionfor…☆27Jan 7, 2025Updated last year
- ☆28Sep 28, 2024Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- R vignettes/pkgdown for elementary statistics for a summer course☆14Jan 9, 2025Updated last year
- Codebase for the paper Zucha et al. titled "Spatiotemporal transcriptomic map of glial cell response in mouse model of acute brain ischem…☆14Oct 23, 2024Updated last year
- Microbial agile accurate SNP Typer☆30Dec 27, 2023Updated 2 years ago
- A collection of documented examples using TreeTime☆22Jul 30, 2019Updated 6 years ago
- Visualise interstrain recombination from environmental samples.☆26Apr 18, 2019Updated 6 years ago
- Haplotype-aware genome assembly toolkit☆30Jan 8, 2020Updated 6 years ago
- Original materials for the "Introduction to Solving Biological Problems with Python" 2 days course☆10Jun 25, 2018Updated 7 years ago
- Калькулятор на python / kivy☆12Oct 1, 2021Updated 4 years ago
- Python Clone of the game "Color Switch"☆10Oct 15, 2018Updated 7 years ago
- ☆10May 14, 2025Updated 9 months ago
- ☆30Sep 21, 2023Updated 2 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Aug 4, 2024Updated last year
- Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.☆33Apr 9, 2025Updated 10 months ago
- Programming for Biology 2019☆41Oct 3, 2022Updated 3 years ago
- Surveillance of pathogens using population genomics and sequencing☆58Feb 13, 2026Updated 3 weeks ago
- Learning the basics of reading and writing files in Python.☆10Mar 16, 2021Updated 4 years ago
- ☆10Jan 20, 2022Updated 4 years ago
- Week 3 of the OSU CoMS Webinar: Introduction to Amplicon Sequencing (QIIME, DADA2, mothur) and Ecological Statistics☆10May 28, 2023Updated 2 years ago
- Automated pipeline for amplicon sequence analysis☆11Nov 25, 2025Updated 3 months ago
- Standardized and Automated MetaBarcoding Analyses workflow (Mirror)☆13Jun 28, 2023Updated 2 years ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆49Feb 26, 2026Updated last week
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Sep 23, 2025Updated 5 months ago
- ngshmmalign is a profile HMM aligner for NGS reads designed particularly for small genomes (such as those of RNA viruses like HIV-1 and H…☆10May 3, 2018Updated 7 years ago