martin-steinegger / kraken-protocolLinks
Metagenome analysis using the Kraken software suite
☆35Updated 3 years ago
Alternatives and similar repositories for kraken-protocol
Users that are interested in kraken-protocol are comparing it to the libraries listed below
Sorting:
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆67Updated last week
- The Microbial Co-occurrence Network Explorer☆21Updated 2 years ago
- Influenza genome analysis Nextflow workflow☆31Updated 2 months ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated 2 years ago
- Detection of incorrectly labeled sequences across kingdoms☆86Updated 3 years ago
- A package to annotate protein sequences☆60Updated 9 months ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated last month
- ☆39Updated 2 years ago
- gutSMASH☆55Updated 2 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 2 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated last month
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 7 years ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆55Updated 3 months ago
- Protein Alignment and Detection Interface☆60Updated last year
- ☆36Updated 4 months ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Updated 5 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 10 months ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- ☆31Updated 4 years ago
- Python bindings for the TaxonKit library☆41Updated last week
- A general metagenomics data mining system focus on robust microbiome research☆58Updated last year
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 10 months ago
- MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.☆36Updated 7 months ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆66Updated last year
- Scalable creating/updating of metagenome profiling databases☆62Updated 5 months ago
- metabolic heatmap☆21Updated 6 years ago
- ☆18Updated 4 years ago