A Nextflow DSL2 pipeline to perform ribo-seq data analysis and comprehensive quality control.
☆22May 25, 2026Updated 5 months ago
Alternatives and similar repositories for riboseq-flow
Users that are interested in riboseq-flow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆27Jun 5, 2025Updated last year
- A comprehensive analysis tool for Ribo-seq and small RNA-seq data☆10Jun 22, 2020Updated 6 years ago
- Pipeline for Ribosome Profiling Data☆19Sep 3, 2026Updated last month
- A list of bioinformatic tools for working with Ribo-Seq data☆27Apr 11, 2024Updated 2 years ago
- RiboPlotR package for Ribo-plot☆16Jun 12, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆43Sep 30, 2026Updated last month
- optimization of ribosome P-site positioning in ribosome profiling data☆64Feb 24, 2025Updated last year
- Analysis pipeline for Ribosome footprinting data☆26Jan 29, 2026Updated 9 months ago
- Pipeline for the analysis of ribosome profiling, or Ribo-seq (also named ribosome footprinting) data.☆38Oct 8, 2026Updated 3 weeks ago
- ggRibo: Ribo-seq periodicity and other single-nucleotide resolution visualizer☆14Jul 17, 2026Updated 3 months ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆26May 30, 2023Updated 3 years ago
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆20Aug 9, 2023Updated 3 years ago
- ☆14Sep 19, 2026Updated last month
- Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data☆11Jun 29, 2017Updated 9 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆55Oct 21, 2025Updated last year
- RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data☆24Oct 3, 2016Updated 10 years ago
- Serves a web interface and RESTful API for reference genome assets.☆12Apr 11, 2026Updated 6 months ago
- release version☆63Jul 29, 2022Updated 4 years ago
- Analyses of Ribo-seq rRNA fragments for Differential Ribosome Heterogeneity and Collision predictions☆17Oct 13, 2026Updated 2 weeks ago
- Extracting gene sets from published pathway figures☆15May 23, 2023Updated 3 years ago
- ☆16Jan 10, 2023Updated 3 years ago
- StructureFold2☆12Jun 25, 2022Updated 4 years ago
- A multi-task neural network for predicting perturbation responses to Alternative Polyadenylation usage levels☆11May 18, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆17Dec 15, 2017Updated 8 years ago
- ☆13Sep 8, 2026Updated last month
- A copy of RiboTaper v1.2☆10Mar 14, 2021Updated 5 years ago
- ☆13Mar 27, 2026Updated 7 months ago
- Transcript specific RNA splicing events lookup☆10Jun 22, 2026Updated 4 months ago
- Microbiome Simulation via Generative Adversarial Network☆10Dec 14, 2020Updated 5 years ago
- high-performance BED-to-GTF converter written in Rust☆21Aug 9, 2026Updated 2 months ago
- PowerBacGWAS: Power calculations for Bacterial GWAS☆13Feb 2, 2022Updated 4 years ago
- Genome-wide assessment of differential translations with ribosome profiling data☆23May 6, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆52Nov 23, 2023Updated 2 years ago
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…☆14Apr 5, 2026Updated 6 months ago
- SHAPE-guided RNA structural homology search☆12Aug 12, 2025Updated last year
- Course homepages for some of the courses given at SciLifeLab☆21Jan 23, 2020Updated 6 years ago
- A command line tool for rapid visualisation of AlphaFold2 and AlphaFold3 predictions.☆17Oct 21, 2025Updated last year
- ☆31Oct 1, 2026Updated 3 weeks ago
- ☆17Mar 3, 2023Updated 3 years ago