A Nextflow DSL2 pipeline to perform ribo-seq data analysis and comprehensive quality control.
☆19May 6, 2026Updated 3 weeks ago
Alternatives and similar repositories for riboseq-flow
Users that are interested in riboseq-flow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆26Jun 5, 2025Updated 11 months ago
- A list of bioinformatic tools for working with Ribo-Seq data☆21Apr 11, 2024Updated 2 years ago
- ☆12Updated this week
- optimization of ribosome P-site positioning in ribosome profiling data☆62Feb 24, 2025Updated last year
- Pipeline for Ribosome Profiling Data☆19Jul 5, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Analysis pipeline for Ribosome footprinting data☆26Jan 29, 2026Updated 4 months ago
- A comprehensive analysis tool for Ribo-seq and small RNA-seq data☆10Jun 22, 2020Updated 5 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆41Feb 14, 2026Updated 3 months ago
- Electronegativity equilibration model for atomic partial charges☆25Mar 9, 2026Updated 2 months ago
- Pipeline for the analysis of ribosome profiling, or Ribo-seq (also named ribosome footprinting) data.☆27May 22, 2026Updated last week
- Very flexible tools for plotting and analyzing all kinds of RNA structure data☆16May 4, 2026Updated 3 weeks ago
- RiboPlotR package for Ribo-plot☆16Jun 12, 2025Updated 11 months ago
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆51Nov 23, 2023Updated 2 years ago
- PowerBacGWAS: Power calculations for Bacterial GWAS☆14Feb 2, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- PyTorch Autodiff DFT-D4 Implementation.☆24May 18, 2026Updated last week
- PyTorch Autodiff DFT-D3 Implementation.☆25May 18, 2026Updated last week
- SHAPE-guided RNA structural homology search☆12Aug 12, 2025Updated 9 months ago
- Paired-scientist AI assistant for reproducible research — lightweight Go runtime, lifecycle hooks, manuscript integration, 12 baseline sc…☆74May 6, 2026Updated 3 weeks ago
- metag-rev-sup☆23Jun 21, 2017Updated 8 years ago
- RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data☆24Oct 3, 2016Updated 9 years ago
- StructureFold2☆12Jun 25, 2022Updated 3 years ago
- bioinformatics R test code☆14Mar 29, 2026Updated 2 months ago
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆19Mar 7, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Course homepages for some of the courses given at SciLifeLab☆21Jan 23, 2020Updated 6 years ago
- GLASS consortium☆14May 31, 2022Updated 3 years ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆18Oct 25, 2024Updated last year
- Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data☆11Jun 29, 2017Updated 8 years ago
- A computation framework designed to detect differential junctions usage between two groups at single cell level☆13Feb 1, 2021Updated 5 years ago
- ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications☆28Dec 12, 2023Updated 2 years ago
- Murine version of MCP-counter, a tool to estimate the immune and stromal composition of heterogeneous tissue, from transcriptomic data☆12Jun 30, 2022Updated 3 years ago
- ☆17Feb 27, 2023Updated 3 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆60May 20, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Simulator for Bacterial Machine learning and Genome-Wide Association Studies☆22Jul 21, 2021Updated 4 years ago
- Analyses of Ribo-seq rRNA fragments for Differential Ribosome Heterogeneity and Collision predictions☆13May 11, 2026Updated 2 weeks ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Aug 10, 2021Updated 4 years ago
- Saluki, a method to predict mRNA half-lives from sequence☆27Oct 7, 2022Updated 3 years ago
- PathIntegrate Python package for pathway-based multi-omics data integration☆19Nov 9, 2024Updated last year
- scAB detects multiresolution cell states with clinical significance☆22Nov 14, 2022Updated 3 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Dec 10, 2024Updated last year