ncherric / IliadLinks
ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications
☆28Updated 2 years ago
Alternatives and similar repositories for Iliad
Users that are interested in Iliad are comparing it to the libraries listed below
Sorting:
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆77Updated 2 months ago
- POSTRE: Prediction Of STRuctural variant Effects☆28Updated last week
- WDL workflows for variant calling and assembly using ONT☆38Updated this week
- A python package and a set of shell commands to handle GTF files☆50Updated last month
- visual analysis of your VCF files☆38Updated 3 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated 5 months ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆52Updated 2 months ago
- Interactive multiscale visualization for structural variation in human genomes☆70Updated this week
- ☆38Updated last year
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆59Updated 10 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆82Updated 11 months ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 3 years ago
- ☆27Updated 11 months ago
- VCF Observer is a VCF file analysis, comparison, and visualization tool.☆18Updated last year
- A tool for projecting genomic alignments to transcriptomic coordinates☆37Updated last year
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆37Updated last month
- gatk4 RNA variant calling pipeline☆58Updated this week
- Structural variant merging tool☆57Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆65Updated 8 months ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last month
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- Fast sequencing data quality metrics☆31Updated 4 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆55Updated last year
- cDNA read preprocessing☆83Updated last year
- A tutorial on structural variant calling for short read sequencing data☆38Updated last year
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆25Updated last month
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated last month
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆54Updated 3 months ago
- ☆70Updated 2 years ago