ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications
☆29Dec 12, 2023Updated 2 years ago
Alternatives and similar repositories for Iliad
Users that are interested in Iliad are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- LMAS - Last (Meta)Genomic Assembler Standing☆12Dec 21, 2022Updated 3 years ago
- Chromatin States Map in mouse embryonic stem cell☆20Apr 11, 2018Updated 8 years ago
- Cellsnake tool main repo☆35Feb 22, 2024Updated 2 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆35Sep 25, 2026Updated last month
- StructureFold2☆12Jun 25, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.☆10Mar 6, 2025Updated last year
- Software to help identify overlap between association scan results and GWAS hit catalogs.☆15Aug 26, 2022Updated 4 years ago
- ☆12Aug 20, 2025Updated last year
- Pipeline for Somatic Variant Calling with WES and WGS data☆24May 7, 2024Updated 2 years ago
- Interactive Protein Sequence VIsualization/Viewer - Interactive Circos☆11Jun 5, 2026Updated 5 months ago
- The Zavolab Automated RNA-seq Pipeline☆36Jan 29, 2026Updated 9 months ago
- A multi-task neural network for predicting perturbation responses to Alternative Polyadenylation usage levels☆11May 18, 2023Updated 3 years ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆57Updated this week
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Microbiome Simulation via Generative Adversarial Network☆10Dec 14, 2020Updated 5 years ago
- PowerBacGWAS: Power calculations for Bacterial GWAS☆13Feb 2, 2022Updated 4 years ago
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 3 years ago
- WDL workflows for variant calling and assembly using ONT☆41Oct 27, 2026Updated last week
- SHAPE-guided RNA structural homology search☆12Aug 12, 2025Updated last year
- This repo contains the knitr code for the paper: Gillespie, C. S., et al, 2010. Analysing yeast time course microarray data using BioCond…☆12Jan 25, 2016Updated 10 years ago
- ☆11Aug 28, 2026Updated 2 months ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆30Sep 9, 2021Updated 5 years ago
- Identification of cell type-specific alternative splicing events using scASfind☆12Mar 23, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Phylommand is a software package to create, manipulate, and/or analyze phylogenetic trees or pairwise alignments.☆11Sep 5, 2024Updated 2 years ago
- Work from the book 'Advanced Python for Biologists'☆15Sep 12, 2018Updated 8 years ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆12Nov 15, 2024Updated last year
- Expectation-Maximization algorithm for Allele-Specific Expression☆22May 9, 2023Updated 3 years ago
- ☆59Dec 5, 2024Updated last year
- A collection of open source bioinformatics tools developed and used by Addgene.☆11Jun 25, 2026Updated 4 months ago
- ☆13Dec 22, 2025Updated 10 months ago
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11May 19, 2020Updated 6 years ago
- ☆16Sep 1, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- SQL dialect for genomic range operations☆10Sep 14, 2026Updated last month
- testing where SNP are in the humain genom☆13Oct 24, 2016Updated 10 years ago
- AXIOME - Automation, Extension, and Integration Of Microbial Ecology: Helper tools to make managing numerical ecology pipelines easier☆13Jun 20, 2014Updated 12 years ago
- Intelligent and cost-effective bidding on cloud computing instances for bioinformatics pipelines.☆13Dec 8, 2017Updated 8 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆15Jun 5, 2026Updated 5 months ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆33Mar 10, 2023Updated 3 years ago
Are these results useful?