Alternatives and similar repositories for Iliad:

Users that are interested in Iliad are comparing it to the libraries listed below

• cccnrc / plot-VCF
  visual analysis of your VCF files
  ☆29Updated 2 years ago
• GooglingTheCancerGenome / sv-callers
  Snakemake-based workflow for detecting structural variants in genomic data
  ☆78Updated 10 months ago
• Kuanhao-Chao / splam
  ✂️ Deep learning-based splice site predictor that improves spliced alignments
  ☆40Updated last month
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆30Updated 3 weeks ago
• deepomicslab / SpecHLA
  SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …
  ☆38Updated 2 months ago
• HKU-BAL / ClairS-TO
  ClairS-TO - a deep-learning method for tumor-only somatic variant calling
  ☆52Updated 2 weeks ago
• lh3 / bedtk
  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
  ☆137Updated 6 months ago
• epi2me-labs / wf-pore-c
  ☆36Updated 3 months ago
• TimoLassmann / samstat
  SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
  ☆24Updated last year
• EI-CoreBioinformatics / portcullis
  Splice junction analysis and filtering from BAM files
  ☆39Updated 2 years ago
• hms-dbmi / chromoscope
  Interactive multiscale visualization for structural variation in human genomes
  ☆66Updated this week
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆35Updated last week
• epi2me-labs / fastcat
  Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.
  ☆32Updated last week
• tobiasrausch / vc
  A tutorial on structural variant calling for short read sequencing data
  ☆26Updated last month
• OceanGenomics / mudskipper
  A tool for projecting genomic alignments to transcriptomic coordinates
  ☆34Updated 6 months ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆111Updated 2 months ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆37Updated 3 weeks ago
• nf-core / rnavar
  gatk4 RNA variant calling pipeline
  ☆38Updated this week
• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆72Updated 3 weeks ago
• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆54Updated 2 months ago
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆100Updated 3 weeks ago
• srbehera / DRAGEN_Analysis
  ☆28Updated 6 months ago
• cpockrandt / genmap
  GenMap - Fast and Exact Computation of Genome Mappability
  ☆102Updated 5 months ago
• epi2me-labs / wf-clone-validation
  ☆26Updated 2 weeks ago
• sbslee / fuc
  Frequently used commands in bioinformatics
  ☆52Updated 2 months ago
• ygidtu / trackplot
  trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…
  ☆78Updated 3 months ago
• nanoporetech / pipeline-nanopore-denovo-isoforms
  Pipeline for de novo clustering of long transcriptomic reads
  ☆26Updated 2 years ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆47Updated 3 months ago
• nanoporetech / katuali
  Analysis pipelines from Oxford Nanopore Technologies' Research Division
  ☆50Updated 4 years ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated last year