ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications
☆28Dec 12, 2023Updated 2 years ago
Alternatives and similar repositories for Iliad
Users that are interested in Iliad are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Chromatin States Map in mouse embryonic stem cell☆19Apr 11, 2018Updated 7 years ago
- This repo contains the knitr code for the paper: Gillespie, C. S., et al, 2010. Analysing yeast time course microarray data using BioCond…☆13Jan 25, 2016Updated 10 years ago
- Software to help identify overlap between association scan results and GWAS hit catalogs.☆15Aug 26, 2022Updated 3 years ago
- Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.☆10Mar 6, 2025Updated last year
- Very flexible tools for plotting and analyzing all kinds of RNA structure data☆16Feb 6, 2026Updated last month
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Pipeline for Somatic Variant Calling with WES and WGS data☆24May 7, 2024Updated last year
- PowerBacGWAS: Power calculations for Bacterial GWAS☆13Feb 2, 2022Updated 4 years ago
- WDL workflows for variant calling and assembly using ONT☆39Mar 17, 2026Updated last week
- openASO is a project designed to identify regulatory regions of an RNA that can be targeted by antisense oligonucleotides.☆11Sep 30, 2021Updated 4 years ago
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated last year
- Biostatistics Guide☆13Jul 20, 2021Updated 4 years ago
- Work from the book 'Advanced Python for Biologists'☆13Sep 12, 2018Updated 7 years ago
- Phylommand is a software package to create, manipulate, and/or analyze phylogenetic trees or pairwise alignments.☆11Sep 5, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆30Sep 9, 2021Updated 4 years ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆113Jun 24, 2025Updated 9 months ago
- SHAPE-guided RNA structural homology search☆12Aug 12, 2025Updated 7 months ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Nov 15, 2024Updated last year
- A Nextflow DSL2 pipeline to perform ribo-seq data analysis and comprehensive quality control.☆19Dec 12, 2025Updated 3 months ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆14Jun 12, 2024Updated last year
- A multi-reference network annotation tool to support omics analysis☆12May 31, 2022Updated 3 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆33Mar 10, 2023Updated 3 years ago
- testing where SNP are in the humain genom☆12Oct 24, 2016Updated 9 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- StructureFold2☆12Jun 25, 2022Updated 3 years ago
- A curated list of awesome resources, papers, datasets, and tools related to Genomic LLMs. This repository aims to provide a comprehensive…☆17Aug 7, 2024Updated last year
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11May 19, 2020Updated 5 years ago
- Shape Changes In Selecting Sample Outliers in RNA-seq☆12Jul 3, 2022Updated 3 years ago
- ☆16Sep 1, 2023Updated 2 years ago
- Documentation for vcfR☆11Feb 23, 2026Updated last month
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆36Mar 13, 2022Updated 4 years ago
- ☆11Aug 21, 2018Updated 7 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Use cloud technology to annotate human sequence variants in parallel.☆11Jun 4, 2021Updated 4 years ago
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 6 months ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- Code repository for the HAYSTAC pipeline☆15Oct 25, 2024Updated last year
- This repo contains tutorials and data for the workshop on phylogenetic methods being delivered at the 2019 Evolution conference in Provid…☆14Jun 26, 2019Updated 6 years ago
- Kedro Snowflake / Snowpark plugin☆14Jul 19, 2024Updated last year
- Genomic VCF to tab-separated values☆48Mar 9, 2023Updated 3 years ago