ncherric / IliadLinks
ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications
☆28Updated last year
Alternatives and similar repositories for Iliad
Users that are interested in Iliad are comparing it to the libraries listed below
Sorting:
- POSTRE: Prediction Of STRuctural variant Effects☆28Updated 7 months ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆49Updated 2 weeks ago
- Interactive multiscale visualization for structural variation in human genomes☆70Updated last week
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆69Updated last month
- ☆27Updated 8 months ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated 2 months ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆36Updated this week
- visual analysis of your VCF files☆36Updated 2 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆54Updated 7 months ago
- A python package and a set of shell commands to handle GTF files☆49Updated last year
- for visual evaluation of read support for structural variation☆55Updated last year
- Gene Fusion Visualiser☆51Updated 2 years ago
- Merging paired-end reads and removing adapters☆46Updated last week
- Fast sequencing data quality metrics☆28Updated last month
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated last month
- ☆35Updated last year
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆44Updated 3 months ago
- A script to make downloading of SRA/GEO data easier☆31Updated 2 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 7 months ago
- gatk4 RNA variant calling pipeline☆54Updated 2 weeks ago
- A tool to design highly specific PCR primers for the validation of genomic alterations including structural variants☆46Updated 8 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated 3 weeks ago
- GATK4 Best Practice Nextflow Pipeline☆33Updated 7 years ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆87Updated this week
- VCF Observer is a VCF file analysis, comparison, and visualization tool.☆18Updated 9 months ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 5 months ago
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆16Updated last month
- A python parser to simplify and build the VCF (Variant Call Format).☆49Updated 11 months ago