ncherric / IliadLinks
ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications
☆28Updated last year
Alternatives and similar repositories for Iliad
Users that are interested in Iliad are comparing it to the libraries listed below
Sorting:
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆34Updated this week
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆68Updated 5 months ago
- Interactive multiscale visualization for structural variation in human genomes☆70Updated last month
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆44Updated last week
- A python package and a set of shell commands to handle GTF files☆49Updated last year
- POSTRE: Prediction Of STRuctural variant Effects☆27Updated 6 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 6 months ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- visual analysis of your VCF files☆36Updated 2 years ago
- A python parser to simplify and build the VCF (Variant Call Format).☆49Updated 10 months ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated last month
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 10 months ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 4 months ago
- Merging paired-end reads and removing adapters☆46Updated 5 months ago
- cDNA read preprocessing☆77Updated last year
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated 3 months ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆54Updated 6 months ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆72Updated 5 months ago
- for visual evaluation of read support for structural variation☆54Updated last year
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- ☆27Updated 6 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Precision HLA typing from next-generation sequencing data☆71Updated last month
- ☆34Updated last year
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated last year
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆80Updated this week
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- BEAVR: A Browser-based tool for the Exploration And Visualization of RNAseq data☆25Updated 3 years ago
- ☆80Updated 3 weeks ago