ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications
☆28Dec 12, 2023Updated 2 years ago
Alternatives and similar repositories for Iliad
Users that are interested in Iliad are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Chromatin States Map in mouse embryonic stem cell☆19Apr 11, 2018Updated 8 years ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆57Dec 12, 2025Updated 5 months ago
- This repo contains the knitr code for the paper: Gillespie, C. S., et al, 2010. Analysing yeast time course microarray data using BioCond…☆13Jan 25, 2016Updated 10 years ago
- Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.☆10Mar 6, 2025Updated last year
- Very flexible tools for plotting and analyzing all kinds of RNA structure data☆16May 4, 2026Updated 3 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Pipeline for Somatic Variant Calling with WES and WGS data☆24May 7, 2024Updated 2 years ago
- PowerBacGWAS: Power calculations for Bacterial GWAS☆14Feb 2, 2022Updated 4 years ago
- WDL workflows for variant calling and assembly using ONT☆39May 12, 2026Updated 2 weeks ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated 2 years ago
- Work from the book 'Advanced Python for Biologists'☆14Sep 12, 2018Updated 7 years ago
- Phylommand is a software package to create, manipulate, and/or analyze phylogenetic trees or pairwise alignments.☆11Sep 5, 2024Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆30Sep 9, 2021Updated 4 years ago
- SHAPE-guided RNA structural homology search☆12Aug 12, 2025Updated 9 months ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆115Jun 24, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆12Nov 15, 2024Updated last year
- A Nextflow DSL2 pipeline to perform ribo-seq data analysis and comprehensive quality control.☆19May 6, 2026Updated 3 weeks ago
- Biostatistics Guide☆14Jul 20, 2021Updated 4 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆14Jun 12, 2024Updated last year
- A multi-reference network annotation tool to support omics analysis☆12May 31, 2022Updated 3 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆33Mar 10, 2023Updated 3 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆22May 9, 2023Updated 3 years ago
- metag-rev-sup☆23Jun 21, 2017Updated 8 years ago
- testing where SNP are in the humain genom☆12Oct 24, 2016Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- StructureFold2☆12Jun 25, 2022Updated 3 years ago
- Launcher shortcuts for classic Jupyter Notebook & JupyterLab☆16Nov 25, 2024Updated last year
- A curated list of awesome resources, papers, datasets, and tools related to Genomic LLMs. This repository aims to provide a comprehensive…☆18Aug 7, 2024Updated last year
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11May 19, 2020Updated 6 years ago
- ☆16Sep 1, 2023Updated 2 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆30Dec 23, 2019Updated 6 years ago
- Documentation for vcfR☆11Feb 23, 2026Updated 3 months ago
- An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.☆40Feb 8, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆36Mar 13, 2022Updated 4 years ago
- ☆11Aug 21, 2018Updated 7 years ago
- Use cloud technology to annotate human sequence variants in parallel.☆11Jun 4, 2021Updated 4 years ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- Code repository for the HAYSTAC pipeline☆15Oct 25, 2024Updated last year
- Kedro Snowflake / Snowpark plugin☆14Jul 19, 2024Updated last year
- Tree Health and Plant Biosecurity Initiative - Phytophthora ITS1 Classifier Tool☆10May 5, 2026Updated 3 weeks ago