SHAPE-guided RNA structural homology search
☆12Aug 12, 2025Updated 10 months ago
Alternatives and similar repositories for SHAPEwarp
Users that are interested in SHAPEwarp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Deconvolution of RNA Alternative COnformations☆15Updated this week
- icSHAPE pipeline☆31Oct 1, 2015Updated 10 years ago
- Package for analyzing RNA crosslinking and proximity ligation data (PARIS and beyond)☆12Mar 7, 2024Updated 2 years ago
- hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data☆13Jul 12, 2024Updated last year
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Nov 11, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Public repository for ShapeMapper 2 releases☆42Mar 27, 2026Updated 2 months ago
- StructureFold2☆12Jun 25, 2022Updated 3 years ago
- ☆21Jul 16, 2024Updated last year
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆49Updated this week
- Centroid RNA package☆20Oct 12, 2020Updated 5 years ago
- the analysis script for PrismNet☆10May 17, 2020Updated 6 years ago
- ☆15Apr 22, 2022Updated 4 years ago
- Analysis of RNA epitranscriptome sequencing data with affinity-based shotgun sequencing approach☆10Apr 2, 2020Updated 6 years ago
- Generate Novel Insights from Gene Correlation Data☆14Jun 27, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…☆13Apr 5, 2026Updated 2 months ago
- BPfold: Deep generalizable prediction of RNA secondary structure via base pair motif energy.☆35May 27, 2026Updated 2 weeks ago
- Workshop lesson material for the GNN and Transformers workshop☆18Apr 27, 2023Updated 3 years ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆67Jul 17, 2024Updated last year
- ☆22Dec 20, 2024Updated last year
- RNA Structural Covariation Above Phylogenetic Expectation☆20Updated this week
- ☆12Feb 13, 2019Updated 7 years ago
- PowerBacGWAS: Power calculations for Bacterial GWAS☆14Feb 2, 2022Updated 4 years ago
- Twitter retrosynthesis bot☆13Jul 10, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Modelling RBP binding preferences to predict RPB binding sites☆11Aug 11, 2023Updated 2 years ago
- ☆15Sep 20, 2022Updated 3 years ago
- init commit☆17Oct 31, 2023Updated 2 years ago
- Very flexible tools for plotting and analyzing all kinds of RNA structure data☆16Jun 2, 2026Updated last week
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆22Jul 22, 2025Updated 10 months ago
- Draw RNA secondary structures in python.☆53Jun 24, 2025Updated 11 months ago
- A Nextflow DSL2 pipeline to perform ribo-seq data analysis and comprehensive quality control.☆19May 25, 2026Updated 3 weeks ago
- Scripts for plotting figures and running analysis throughout the manuscript☆11Nov 2, 2021Updated 4 years ago
- metag-rev-sup☆23Jun 21, 2017Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Quantitative analysis of native tRNA populations using direct RNA nanopore sequencing (Lucas*, Pryszcz* et al., Nat Biotech 2023)☆16Sep 19, 2024Updated last year
- Parallel solution for local RNA secondary structure analysis☆12Feb 14, 2023Updated 3 years ago
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆52Nov 23, 2023Updated 2 years ago
- Secondary structure prediction of long non-coding RNA: review and experimental comparison of existing approaches, L.A. Bugnon, A.A. Edera…☆20Mar 17, 2024Updated 2 years ago
- Deep learning based imputation of RNA secondary structure profile.☆16May 1, 2022Updated 4 years ago
- A useful toolbox for research.☆44Jul 10, 2024Updated last year
- Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi☆12May 19, 2026Updated 3 weeks ago