Pipeline for the analysis of ribosome profiling, or Ribo-seq (also named ribosome footprinting) data.
☆35Aug 13, 2026Updated this week
Alternatives and similar repositories for riboseq
Users that are interested in riboseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A list of bioinformatic tools for working with Ribo-Seq data☆25Apr 11, 2024Updated 2 years ago
- A Nextflow DSL2 pipeline to perform ribo-seq data analysis and comprehensive quality control.☆21May 25, 2026Updated 2 months ago
- A nextflow pipeline for calling modifications in nanopore reads.☆16Updated this week
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆54Oct 21, 2025Updated 9 months ago
- We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of bacterial Ri…☆14May 22, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- RiboPlotR package for Ribo-plot☆16Jun 12, 2025Updated last year
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Jan 21, 2022Updated 4 years ago
- Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and gro…☆27Updated this week
- ☆14Dec 26, 2025Updated 7 months ago
- Course homepages for some of the courses given at SciLifeLab☆21Jan 23, 2020Updated 6 years ago
- Analysis pipeline for Ribosome footprinting data☆26Jan 29, 2026Updated 6 months ago
- Riborex: Fast and flexible identification of differential translation from Ribo-seq data☆12Apr 9, 2021Updated 5 years ago
- repDNA is a Python package to generate various features of DNA sequences incorporating physicochemical properties and sequence-order effe…☆14Jul 16, 2022Updated 4 years ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆57Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- release version☆62Jul 29, 2022Updated 4 years ago
- Protein sequence domain annotation with a language model☆34Apr 21, 2026Updated 3 months ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆43Feb 14, 2026Updated 6 months ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆17Sep 26, 2021Updated 4 years ago
- ☆16Dec 3, 2025Updated 8 months ago
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Jan 31, 2025Updated last year
- MeRIP-seq analysis pipeline arranged multiple alignment tools, peakCalling tools, Merge Peaks' methods and methylation analysis methods.☆23Jun 18, 2021Updated 5 years ago
- Parallelised and automated construction of metagenomic classifier databases of different tools☆22Jul 25, 2026Updated 3 weeks ago
- Just another minhash implementation.☆13May 28, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted nex…☆62Jul 27, 2026Updated 2 weeks ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆30Sep 18, 2024Updated last year
- ☆17Dec 15, 2017Updated 8 years ago
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆36Updated this week
- Pipeline for Ribosome Profiling Data☆19Jul 5, 2023Updated 3 years ago
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jul 28, 2026Updated 2 weeks ago
- ☆15Nov 7, 2024Updated last year
- Compare the quality of multiple genomes, along with their annotations.☆25Updated this week
- gatk4 RNA variant calling pipeline☆61Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Demultiplexing pipeline for sequencing data☆59Updated this week
- RNAcode - Detecting protein coding genes in multiple sequence alignment☆26Aug 22, 2024Updated last year
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆44Mar 21, 2026Updated 4 months ago
- ☆51Jan 23, 2026Updated 6 months ago
- Workflow for MAG quality assessment and taxonomical annotation.☆15May 26, 2026Updated 2 months ago
- public production version of sequin to share with the public☆11Jun 12, 2026Updated 2 months ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year