nf-core / riboseqLinks
Pipeline for the analysis of ribosome profiling, or Ribo-seq (also named ribosome footprinting) data.
☆13Updated 2 weeks ago
Alternatives and similar repositories for riboseq
Users that are interested in riboseq are comparing it to the libraries listed below
Sorting:
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆54Updated last month
- ☆79Updated last month
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆42Updated 2 weeks ago
- ☆12Updated 4 months ago
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆45Updated last year
- A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.☆38Updated last week
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆43Updated last month
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆69Updated 4 months ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆79Updated this week
- A Python library to visualize and analyze long-read transcriptomes☆62Updated 2 months ago
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆31Updated last month
- SingleCell Nanopore sequencing data analysis☆60Updated last month
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆65Updated 2 weeks ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆31Updated last week
- visual analysis of your VCF files☆34Updated 2 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆78Updated 3 years ago
- Bioinformatics one-liner for 100 days☆49Updated last year
- A small-RNA sequencing analysis pipeline☆87Updated last month
- ☆27Updated 5 months ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 7 months ago
- practical course about lab methods in genome research☆23Updated 2 years ago
- ☆31Updated 2 months ago
- circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data☆57Updated this week
- Merging paired-end reads and removing adapters☆45Updated 4 months ago
- A rust framework to make using alevin-fry even simpler☆56Updated 2 months ago
- gatk4 RNA variant calling pipeline☆50Updated 2 weeks ago
- ☆29Updated 11 months ago
- tools and notes for long reads analysis☆24Updated 3 months ago