Murine version of MCP-counter, a tool to estimate the immune and stromal composition of heterogeneous tissue, from transcriptomic data
☆12Jun 30, 2022Updated 3 years ago
Alternatives and similar repositories for mMCP-counter
Users that are interested in mMCP-counter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆60Jun 21, 2022Updated 3 years ago
- Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data☆11Jun 29, 2017Updated 8 years ago
- A docker-compose setup for binhex/arch-delugevpn.☆10May 8, 2020Updated 6 years ago
- simpler single cell RNAseq data Visualization☆12Feb 28, 2025Updated last year
- bioinformatics R test code☆14Mar 29, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆15Jan 16, 2024Updated 2 years ago
- 『統計的因果推論の理論と実装』（共立出版）で使用したデータです．Codeをクリックして，Download ZIPをクリックすればダウンロードできます．書籍の情報はこちらです．https://www.kyoritsu-pub.co.jp/bookdetail/97843201…☆18Aug 9, 2022Updated 3 years ago
- FastViromeExplorer project. Forked from https://code.vt.edu/saima5/FastViromeExplorer☆14Jul 2, 2019Updated 6 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆81Jun 13, 2025Updated 10 months ago
- helixlife-WGCNA-2018 https://github.com/xndless/helixlife-WGCNA-2018.git☆13Oct 25, 2018Updated 7 years ago
- Pseudotime Analysis for Bulk Data☆19Aug 2, 2024Updated last year
- Pipeline for Cut&Tag analysis☆25Apr 15, 2025Updated last year
- A tutorial for Metagenome-Atlas☆23Nov 24, 2023Updated 2 years ago
- CDSeq R Package☆21Jul 1, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An automated assembly pipeline for microbial genomes☆19Jan 15, 2026Updated 3 months ago
- Survival Analysis for Protein-Level TCGA Analysis☆12Nov 30, 2018Updated 7 years ago
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Jun 28, 2017Updated 8 years ago
- R package for differential discovery analyses in high-dimensional cytometry data☆24Feb 8, 2025Updated last year
- ☆23Jun 29, 2018Updated 7 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆23Apr 16, 2019Updated 7 years ago
- Development repository for the multiMiR database's R API☆24Aug 28, 2024Updated last year
- Rank Aggregation Algorithms☆12Jul 22, 2014Updated 11 years ago
- A portable and fast single cell type identifier☆64May 12, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Apr 10, 2020Updated 6 years ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- Nextflow pipeline for Mutect2 somatic variant calling best practices☆23Jun 14, 2024Updated last year
- Paired-scientist AI assistant for reproducible research — lightweight Go runtime, lifecycle hooks, manuscript integration, 12 baseline sc…☆64Apr 26, 2026Updated last week
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Mar 21, 2020Updated 6 years ago
- Sliding Window Inference for Network Generation☆10Feb 14, 2018Updated 8 years ago
- Snakemake pipeline for benchmarking read mappers☆16Dec 11, 2023Updated 2 years ago
- Scalable genomic analysis pipelines, written in WDL☆12Mar 11, 2026Updated last month
- GLASS consortium☆14May 31, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Nov 10, 2021Updated 4 years ago
- Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.☆28Nov 2, 2021Updated 4 years ago
- Superseded by https://github.com/MD-Anderson-Bioinformatics/BatchEffectsPackage☆12Aug 13, 2020Updated 5 years ago
- A detailed guide to analise and integrate small-RNASeq and RNASeq samples using miARma-Seq☆11Oct 16, 2019Updated 6 years ago
- ☆52Feb 12, 2024Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆58Jun 29, 2023Updated 2 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Feb 9, 2021Updated 5 years ago