Alternatives and similar repositories for mMCP-counter

Users that are interested in mMCP-counter are comparing it to the libraries listed below

• shizhuoxing / scISA-Tools
  single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…
  ☆26Updated last year
• ChongJenniferZhang / CLCA_WGS
  ☆26Updated 2 years ago
• a-velt / Mfuzz_RNAseq
  A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.
  ☆22Updated 6 years ago
• MengjunWu / TCseq
  An R package for time course sequencing data analysis
  ☆20Updated 2 years ago
• ait5 / CNApp
  CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…
  ☆20Updated 5 years ago
• slagtermaarten / LOHHLA
  Fork of https://bitbucket.org/mcgranahanlab/lohhla
  ☆18Updated 5 years ago
• TheJacksonLaboratory / BRCA-LRseq-pipeline
  Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
  ☆16Updated 3 years ago
• tushiqi / MAnorm2
  MAnorm2 for Normalizing and Comparing ChIP-seq Samples
  ☆32Updated 3 years ago
• WRui / Post_Implantation
  ☆29Updated 4 years ago
• YiPeng-Gao / scDaPars
  Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)
  ☆18Updated 4 years ago
• UMCUGenetics / primary-met-wgs-comparison
  Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.
  ☆18Updated 2 years ago
• gerstung-lab / MutationTimeR
  An R package to time somatic mutations
  ☆65Updated 4 years ago
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆42Updated 2 years ago
• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆44Updated 4 years ago
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆22Updated 2 years ago
• sunhuaibo / Sun_bio
  ☆13Updated last year
• cancersysbio / SCIMET
  Spatial Computational Inference of MEtastatic Timing (SCIMET)
  ☆14Updated 6 years ago
• wanqingshao / TE_expression_in_scRNAseq
  ☆18Updated 5 years ago
• wenweixiong / MARVEL
  ☆52Updated last year
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆25Updated 3 years ago
• YangLab / RADAR
  RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.
  ☆20Updated 3 months ago
• TRON-Bioinformatics / EasyFuse
  EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.
  ☆62Updated last month
• ChrisMaherLab / INTEGRATE-Neo
  ☆19Updated 7 years ago
• McGranahanLab / TcellExTRECT
  ☆47Updated 11 months ago
• shahcompbio / single_cell_pipeline
  Single Cell Analysis Automated Workflow
  ☆28Updated 2 years ago
• junjunlab / tackPlotR
  An R package to visualize bigwigs.
  ☆32Updated 3 years ago
• shunliubio / easym6A
  Process m6A/MeRIP-seq data in a single or batch job mode
  ☆20Updated 5 years ago
• greenelab / gbm_immune_validation
  Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors
  ☆14Updated 6 years ago
• ggjlab / scHCL
  ☆47Updated 5 years ago
• Niinleslie / MesKit
  A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations
  ☆35Updated 3 years ago