cit-bioinfo / mMCP-counterLinks
Murine version of MCP-counter, a tool to estimate the immune and stromal composition of heterogeneous tissue, from transcriptomic data
☆12Updated 2 years ago
Alternatives and similar repositories for mMCP-counter
Users that are interested in mMCP-counter are comparing it to the libraries listed below
Sorting:
- ☆17Updated 4 years ago
- Analysis pipeline for our circSC manuscript☆13Updated 3 years ago
- ☆25Updated last year
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- ☆13Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- ☆32Updated 6 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Codes associated with the Poran, Nötzel et al. paper titled "Single-cell RNA-seq reveals a signature of sexual commitment in malaria para…☆9Updated 7 years ago
- Process m6A/MeRIP-seq data in a single or batch job mode☆20Updated 5 years ago
- ☆27Updated 3 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆30Updated 2 years ago
- ☆13Updated 7 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆19Updated 3 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- RAGE-seq scripts☆18Updated 3 years ago
- Scripts used for the ACT paper☆12Updated 4 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆15Updated 4 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- ☆49Updated 10 months ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- Analysis pipeline for CUT&TAG data☆18Updated 4 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated 2 years ago