A tool for agile functional analysis of shotgun metagenomic data
☆24Sep 15, 2024Updated last year
Alternatives and similar repositories for SUPER-FOCUS
Users that are interested in SUPER-FOCUS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for simulations and analysis for "Latent Variable Modeling for the Microbiome."☆21Dec 30, 2019Updated 6 years ago
- Functional Analysis of Metagenomes by Likelihood Inference☆17Sep 8, 2025Updated 6 months ago
- A pipeline for primary analysis of shotgun metagenomic sequencing data☆11Jun 10, 2019Updated 6 years ago
- Companion notebooks for "Dog and human inflammatory bowel disease rely on overlapping yet distinct dysbiosis networks"☆11Jul 13, 2018Updated 7 years ago
- ☆11Mar 5, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Fast tool to build the core genome of prokaryotic genomes. Can handle large datasets. Dependencis: Usearch & Numpy☆10Nov 26, 2025Updated 4 months ago
- Aunar esfuerzos técnicos administrativos y financieros para llevar a cabo procesos de formación académica en programación, mediante el de…☆14Jun 13, 2022Updated 3 years ago
- TAXnomic Profile Aggregation and STAndardisation☆42Nov 18, 2025Updated 4 months ago
- Automated pipeline for amplicon sequence analysis☆11Nov 25, 2025Updated 4 months ago
- ☆10Dec 22, 2025Updated 3 months ago
- Long-read metagenomic analysis☆110Oct 10, 2023Updated 2 years ago
- PhylOTU identifies microbial OTUs from metagenomic data☆24May 16, 2013Updated 12 years ago
- MicrobeDirectory 2.0☆22Aug 10, 2020Updated 5 years ago
- A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.☆12Feb 17, 2025Updated last year
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Toolchest Python client☆15Sep 6, 2023Updated 2 years ago
- ☆27Aug 2, 2023Updated 2 years ago
- Gmove is a gene prediction tool☆21Oct 9, 2024Updated last year
- FastViromeExplorer project. Forked from https://code.vt.edu/saima5/FastViromeExplorer☆14Jul 2, 2019Updated 6 years ago
- Microbiome research☆21May 24, 2022Updated 3 years ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆184Updated this week
- A taxonomic classifier for shotgun metagenomics reads☆11Apr 4, 2025Updated 11 months ago
- Woltka: a versatile meta'omic data classifier☆77Sep 8, 2025Updated 6 months ago
- Microbiome classification pipeline☆67May 13, 2025Updated 10 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆19Jan 16, 2024Updated 2 years ago
- MetScale: snakemake workflows to scale metagenome analyses☆19May 15, 2025Updated 10 months ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Jul 3, 2021Updated 4 years ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated last month
- Climate change is a controversial topic of debate, where many of us do not believe in anthropogenic climate change. Because its consequen…☆11Sep 20, 2022Updated 3 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Nov 12, 2020Updated 5 years ago
- metagenome population recombination rate estimation pipeline☆12Nov 23, 2025Updated 4 months ago
- PGPg_finder is a command-line tool that offers different workflows for genome and metagenome annotation of Plant-Growth Promotion Genes. …☆29Jan 20, 2026Updated 2 months ago
- 16S taxonomy assignment using an ecosystem-specific database.☆17Feb 13, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A repo with just adapter sequences☆15Jul 7, 2025Updated 8 months ago
- 16S rRNA database☆13Nov 29, 2018Updated 7 years ago
- Distributed dynamic process model (DDPM) is a bidirectional coupling eco-hydrological model for (but not limited to) steppe inland river …☆10Jul 9, 2025Updated 8 months ago
- SHallow shOtGUN profiler☆52Mar 4, 2022Updated 4 years ago
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆10Oct 3, 2025Updated 5 months ago
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago
- MIMIX: a Bayesian Mixed-Effects Model for Microbiome Data from Designed Experiments☆11Jul 9, 2020Updated 5 years ago