☆17Feb 27, 2023Updated 3 years ago
Alternatives and similar repositories for DeepRibo
Users that are interested in DeepRibo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A gui application for the DeepMTP framework using streamlit☆35Aug 21, 2023Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Jan 26, 2022Updated 4 years ago
- Bam to Pandas DataFrame, quickly☆13May 10, 2025Updated last year
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆16Sep 26, 2017Updated 8 years ago
- A tool to detect RRNPP-type quorum sensing systems☆10Mar 24, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆34Oct 27, 2021Updated 4 years ago
- Simple implementations of attention modules adapted for the biological data domain.☆14May 20, 2025Updated last year
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆19Jul 19, 2025Updated 10 months ago
- MayaChemTools is a growing collection of Perl and Python scripts, modules, and classes to support a variety of day-to-day computational d…☆10Sep 1, 2020Updated 5 years ago
- A python-based framework for multi-target prediction☆51Oct 30, 2023Updated 2 years ago
- The tRNA adaptation index☆20Apr 25, 2025Updated last year
- 🎨 Python library to plot multi-part genetic constructs☆26Apr 9, 2025Updated last year
- This repository contains the source code of the R package for EvoGeneX, a software to infer the mode of evolution from the gene expressio…☆29Dec 1, 2025Updated 5 months ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of bacterial Ri…☆14May 22, 2025Updated last year
- ☆12Apr 28, 2026Updated 3 weeks ago
- Paired-scientist AI assistant for reproducible research — lightweight Go runtime, lifecycle hooks, manuscript integration, 12 baseline sc…☆74May 6, 2026Updated 2 weeks ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆52Aug 16, 2021Updated 4 years ago
- Open Source Population Balance Equation Solver☆19Dec 1, 2016Updated 9 years ago
- Pan-genome Analysis☆12May 4, 2025Updated last year
- Scripts and instructions to apply RiboTIE on Ribo-seq data☆19Jul 22, 2025Updated 10 months ago
- bioinformatics R test code☆14Mar 29, 2026Updated last month
- GLASS consortium☆14May 31, 2022Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A Python+Web tool visualizes ward placements and smoke usage from professional matches using DOTABUFF data. It creates interactive heatma…☆22Nov 16, 2025Updated 6 months ago
- 基于appium实现自动刷抖音☆13Dec 20, 2020Updated 5 years ago
- A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning☆26Nov 20, 2023Updated 2 years ago
- Code for "De novo molecular design with chemical language models"☆13Nov 10, 2021Updated 4 years ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 7 years ago
- Python3 wrapper for parallelized gene prediction using Prodigal☆11Mar 3, 2023Updated 3 years ago
- ☆11Feb 9, 2024Updated 2 years ago
- Utilities for pre-processing emission-excitation-matrix (EEM).☆21Dec 17, 2025Updated 5 months ago
- Calculate Fractal Dimension for Grayscale and Colour Images using Box Count Method☆23Apr 5, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A list of bioinformatic tools for working with Ribo-Seq data☆21Apr 11, 2024Updated 2 years ago
- Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data☆11Jun 29, 2017Updated 8 years ago
- A computation framework designed to detect differential junctions usage between two groups at single cell level☆13Feb 1, 2021Updated 5 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆52Aug 13, 2024Updated last year
- 将速铂下载工具进行封装，以便高效方便地批量下载SRA测序数据。☆11Sep 1, 2020Updated 5 years ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆24Nov 9, 2022Updated 3 years ago
- FREE Divergence Error-Correcting DNA Barcodes☆29Feb 6, 2025Updated last year