Alternatives and similar repositories for Ribo-seq:

Users that are interested in Ribo-seq are comparing it to the libraries listed below

• olarerin / metaPlotR
  A Perl/R pipeline for plotting metagenes
  ☆37Updated 3 years ago
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆48Updated this week
• BioinfoUNIBA / REDItools2
  ☆54Updated 3 years ago
• xryanglab / RiboCode
  release version
  ☆51Updated 2 years ago
• xuzhougeng / R-ChIP-data-analysis
  ☆51Updated 6 years ago
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆56Updated 4 years ago
• 3UTR / DaPars2
  Dynamics analysis of Alternative PolyAdenylation from RNA-seq
  ☆55Updated last year
• iprada / Circle-Map
  A method for circular DNA detection based on probabilistic mapping of ultrashort reads
  ☆61Updated 7 months ago
• deepomicslab / SpecHLA
  SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …
  ☆41Updated this week
• smithlabcode / ribotricer
  A tool for accurately detecting actively translating ORFs from Ribo-seq data
  ☆36Updated 3 weeks ago
• liucongcas / GLORI-tools
  bioinformatic pipeline for GLORI
  ☆18Updated 9 months ago
• MonashBioinformaticsPlatform / RSeQC
  fork of RSeQC python RNAseq metrics suit of tools
  ☆48Updated 6 years ago
• dieterich-lab / JACUSA2
  New version of JACUSA -> 2.0
  ☆24Updated 3 weeks ago
• hsinyenwu / RiboPlotR
  RiboPlotR package for Ribo-plot
  ☆14Updated last year
• nloyfer / UXM_deconv
  ☆40Updated 2 years ago
• xryanglab / RiboMiner
  a toolset for mining multi-dimensional features of the translatome with ribosome profiling data
  ☆16Updated last month
• LappalainenLab / lorals_paper_code
  ☆24Updated 2 years ago
• jlab-code / MethylStar
  A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
  ☆34Updated 3 years ago
• bioinfo-biols / CIRI-long
  Circular RNA Identification for Nanopore Sequencing
  ☆19Updated 8 months ago
• FelixKrueger / SNPsplit
  Allele-specific alignment sorting
  ☆54Updated 2 years ago
• zhpn1024 / ribotish
  Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data
  ☆35Updated 2 months ago
• a2iEditing / RNAEditingIndexer
  A tool for the calculation of RNA-editing index for RNA seq data
  ☆40Updated last year
• dxsbiocc / Workflow
  The snakemake analysis workflow for bioinformatics
  ☆23Updated 8 months ago
• ygidtu / trackplot
  trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…
  ☆83Updated 2 weeks ago
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆22Updated last year
• wyang17 / SQuIRE
  Software for Quantifying Interspersed Repeat Expression
  ☆53Updated 2 years ago
• zhejilab / RibORF
  Identifying genome-wide translated open reading frames using ribosome profiling
  ☆21Updated last year
• tjbencomo / ngs-pipeline
  Pipeline for Somatic Variant Calling with WES and WGS data
  ☆21Updated 9 months ago
• yuanlizhanshi / NGS_Workflow
  Some NGS workflow created by snakemake
  ☆13Updated last month
• scottzijiezhang / m6A-seq_analysis_workflow
  A pipeline to process m6A-seq data and down stream analysis.
  ☆43Updated 4 years ago