Analysis pipeline for Ribosome footprinting data
☆26Jan 29, 2026Updated 6 months ago
Alternatives and similar repositories for Ribo-seq
Users that are interested in Ribo-seq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data☆24Oct 3, 2016Updated 9 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆54Oct 21, 2025Updated 9 months ago
- RiboPlotR package for Ribo-plot☆16Jun 12, 2025Updated last year
- A list of bioinformatic tools for working with Ribo-Seq data☆25Apr 11, 2024Updated 2 years ago
- A Nextflow DSL2 pipeline to perform ribo-seq data analysis and comprehensive quality control.☆21May 25, 2026Updated 2 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Pipeline for Analysis of ChIP-Seq data☆10May 20, 2026Updated 2 months ago
- ☆10Jan 15, 2020Updated 6 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆26May 30, 2023Updated 3 years ago
- Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data☆11Jun 29, 2017Updated 9 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆43Feb 14, 2026Updated 5 months ago
- NGS Tutorial☆15Apr 22, 2017Updated 9 years ago
- bioinformatics learning☆13Oct 10, 2023Updated 2 years ago
- release version☆61Jul 29, 2022Updated 4 years ago
- ☆11Mar 25, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- optimization of ribosome P-site positioning in ribosome profiling data☆64Feb 24, 2025Updated last year
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆22Mar 25, 2022Updated 4 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Apr 2, 2024Updated 2 years ago
- 4C-seq processing pipeline☆28Mar 17, 2025Updated last year
- ☆26Jun 5, 2025Updated last year
- Pipeline for the analysis of ribosome profiling, or Ribo-seq (also named ribosome footprinting) data.☆35Updated this week
- ☆12Sep 8, 2021Updated 4 years ago
- ☆20Nov 16, 2023Updated 2 years ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆15Mar 11, 2026Updated 4 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- TD2☆41May 17, 2026Updated 2 months ago
- Integrating Ribo-SEQ Upstream and Downstream Analysis☆12Oct 14, 2024Updated last year
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆21Dec 24, 2020Updated 5 years ago
- An analysis pipeline for Nanopore direct-RNA sequencing☆13Jul 24, 2025Updated last year
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆23Sep 7, 2019Updated 6 years ago
- A toolset to analyze genomic footprinting data☆20Jul 28, 2026Updated last week
- Consensus genome annotation using OMA☆32Jan 14, 2026Updated 6 months ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆15Jul 2, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A fast and accurate RNA secondary structure, end-to-end approach prediction method.☆13Jan 2, 2025Updated last year
- Pipeline for Cut&Tag analysis☆25Apr 15, 2025Updated last year
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆28Mar 23, 2022Updated 4 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆20Jul 13, 2020Updated 6 years ago
- ☆17Sep 9, 2020Updated 5 years ago
- ☆25Jun 27, 2023Updated 3 years ago
- Course homepages for some of the courses given at SciLifeLab☆21Jan 23, 2020Updated 6 years ago