Bushell-lab / Ribo-seqLinks
Analysis pipeline for Ribosome footprinting data
☆25Updated last week
Alternatives and similar repositories for Ribo-seq
Users that are interested in Ribo-seq are comparing it to the libraries listed below
Sorting:
- ☆11Updated last month
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- Circular RNA Identification for Nanopore Sequencing☆22Updated last year
- bioinformatic pipeline for GLORI☆22Updated last year
- ☆60Updated 6 months ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆65Updated last year
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- 4C-seq processing pipeline☆26Updated 10 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 6 months ago
- ☆23Updated 2 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆24Updated 2 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated 2 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 10 months ago
- Docker for 4DN Hi-C processing pipeline☆61Updated last year
- ☆64Updated 4 months ago
- Helper scripts for biological data processing from Sentieon☆64Updated last week
- Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs☆55Updated 3 weeks ago
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆26Updated 9 months ago
- Quantification of transposable element expression using RNA-seq☆82Updated last year
- Tutorial Website☆63Updated 5 years ago
- ☆38Updated 2 years ago
- An easy-to-use Hi-C data processing software supporting distributed computation.☆62Updated last year
- SingleCell Nanopore sequencing data analysis☆63Updated 8 months ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆54Updated 3 months ago
- ☆21Updated last year
- New version of JACUSA -> 2.0☆30Updated 2 months ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆61Updated 5 months ago
- HiC uniform processing pipeline☆62Updated 2 years ago
- ☆27Updated 3 years ago