☆26Jun 5, 2025Updated last year
Alternatives and similar repositories for Riboformer
Users that are interested in Riboformer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analyses of Ribo-seq rRNA fragments for Differential Ribosome Heterogeneity and Collision predictions☆16Aug 5, 2026Updated 3 weeks ago
- A Nextflow DSL2 pipeline to perform ribo-seq data analysis and comprehensive quality control.☆21May 25, 2026Updated 3 months ago
- Analysis and Visualization of Ribosome Profiling Data☆32Aug 29, 2025Updated last year
- ☆17Dec 17, 2025Updated 8 months ago
- RNA sequence design for a target protein sequence☆13Jun 2, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆44Jul 3, 2025Updated last year
- optimization of ribosome P-site positioning in ribosome profiling data☆64Feb 24, 2025Updated last year
- ☆13Updated this week
- ☆30Sep 9, 2025Updated 11 months ago
- ☆10Nov 6, 2023Updated 2 years ago
- A comprehensive analysis tool for Ribo-seq and small RNA-seq data☆10Jun 22, 2020Updated 6 years ago
- A Shiny-based framework to analyze and visualize interactively genomic data☆11May 11, 2023Updated 3 years ago
- Code for the Framepool model☆16Feb 1, 2025Updated last year
- Tutorial for using MCMCTree as implemented by Brown Lab at SIUC. For divergence time estimation on UCE datasets, for dendrobatid frogs.☆10Jun 19, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Saluki, a method to predict mRNA half-lives from sequence☆30Oct 7, 2022Updated 3 years ago
- Repository for mRNA Paper and CodonBERT publication.☆146May 19, 2026Updated 3 months ago
- Protein scoring and sampling of 'Combinatorial Variant Effects from Structure' (CoVES)☆11Jan 5, 2024Updated 2 years ago
- Detection of differential translated genes using Ribo-seq☆17Apr 10, 2021Updated 5 years ago
- We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of bacterial Ri…☆14May 22, 2025Updated last year
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆17Updated this week
- k-mer probability logo☆12Jan 20, 2023Updated 3 years ago
- ☆38Aug 17, 2026Updated 2 weeks ago
- ☆96Oct 9, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆126Feb 5, 2026Updated 6 months ago
- Generating Protein Variants with Different Generative Models (HMM, VAE, ESM-2, ProtGPT2)☆11Mar 14, 2024Updated 2 years ago
- A biological dual-language foundation model☆11Jun 16, 2025Updated last year
- A platform for image algorithm validation in public challenges.☆16Jan 13, 2017Updated 9 years ago
- LorMe package for R:Lightening One-code Resolving Microbial Ecology Program☆18Jul 20, 2026Updated last month
- ☆14Dec 10, 2018Updated 7 years ago
- An R package for manipulating phylogentic trees☆11Nov 1, 2020Updated 5 years ago
- ☆18Dec 2, 2025Updated 8 months ago
- This repository hosts the software of GEMORNA, a generative AI tool for mRNA sequence design.☆100Nov 11, 2025Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- https://www.nature.com/articles/s41598-020-74091-z#Tab1☆40Mar 13, 2024Updated 2 years ago
- ☆64Jun 14, 2021Updated 5 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- ☆16Mar 1, 2025Updated last year
- Genome-informed, trait-based dynamic energy budget modeling of microbes with ML analysis of emergent strategies☆19Feb 18, 2026Updated 6 months ago
- Dinoflagellate Annotation Workflow☆15Jun 4, 2026Updated 2 months ago
- How research parasites can download your data!☆17Jul 24, 2025Updated last year