Alternatives and similar repositories for Riboformer

Users that are interested in Riboformer are comparing it to the libraries listed below

• ntranoslab / esm-variants
  ☆80Updated 2 years ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆95Updated 8 months ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆56Updated last year
• ychuest / Awesome-LLMs-meet-genomes
  Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…
  ☆101Updated last month
• BackofenLab / RNAProt
  Modelling RBP binding preferences to predict RPB binding sites
  ☆11Updated 2 years ago
• de-Boer-Lab / random-promoter-dream-challenge-2022
  ☆32Updated 8 months ago
• songlab-cal / gpn
  Genomic Pre-trained Network
  ☆292Updated last week
• lingxusb / megaDNA
  ☆71Updated 11 months ago
• OATML-Markslab / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆183Updated last year
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆15Updated last year
• RTH-tools / crispron
  CRISPR Cas9 ontarget prediction software
  ☆27Updated 7 months ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆153Updated 10 months ago
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆120Updated last year
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆44Updated 2 years ago
• Illumina / PrimateAI-3D
  ☆67Updated 7 months ago
• calico / borzoi
  RNA-seq prediction with deep convolutional neural networks.
  ☆198Updated last month
• xinyu-dev / igblast
  Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python
  ☆29Updated 3 years ago
• SBRG / iModulonMiner
  Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA
  ☆22Updated 11 months ago
• Karollus / 5UTR
  Code for the Framepool model
  ☆14Updated 8 months ago
• hsalis / SalisLabCode
  Models, design algorithms, and other software related to Salis lab publications
  ☆35Updated 11 months ago
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆84Updated 3 years ago
• kuixu / PrismNet
  Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure
  ☆65Updated last year
• a96123155 / UTR-LM
  ☆90Updated 11 months ago
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆81Updated 6 months ago
• iraiosub / riboseq-flow
  A Nextflow DSL2 pipeline to perform ribo-seq data analysis and comprehensive quality control.
  ☆15Updated last month
• bm2-lab / DeepCRISPR
  ☆67Updated 2 years ago
• jzhoulab / puffin
  deep learning-inspired explainable sequence model for transcription initiation
  ☆96Updated 7 months ago
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆35Updated 3 years ago
• bionumpy / bionumpy
  Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/
  ☆286Updated 3 months ago
• MicroResearchLab / AMP-potency-prediction-EvoGradient
  A PyTorch implementation of "Automatic Identification and Virtual Directed Evolution of Antimicrobial Peptides with Explainable Deep Lear…
  ☆35Updated 2 months ago