smithlabcode / ribotricerLinks
A tool for accurately detecting actively translating ORFs from Ribo-seq data
☆40Updated last year
Alternatives and similar repositories for ribotricer
Users that are interested in ribotricer are comparing it to the libraries listed below
Sorting:
- ☆60Updated 6 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 6 months ago
- A list of alternative splicing analysis resources☆47Updated 10 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆84Updated 4 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆59Updated 11 months ago
- Tools for analyzing DNA methylation data☆44Updated 3 weeks ago
- SingleCell Nanopore sequencing data analysis☆63Updated 8 months ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 3 months ago
- Demultiplexes a fastq.☆48Updated 5 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated 3 weeks ago
- Estimate locus specific human LINE-1 expression.☆39Updated 2 weeks ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Tutorial Website☆63Updated 5 years ago
- IDR☆30Updated 2 years ago
- ☆50Updated 4 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆123Updated 2 months ago
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- Quantification of transposable element expression using RNA-seq☆82Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- ☆64Updated 4 months ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆74Updated this week
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated 2 months ago
- Publication quality NGS track plotting☆117Updated 3 months ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆87Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆65Updated 2 weeks ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆63Updated 4 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago