smithlabcode / ribotricerLinks
A tool for accurately detecting actively translating ORFs from Ribo-seq data
☆39Updated 9 months ago
Alternatives and similar repositories for ribotricer
Users that are interested in ribotricer are comparing it to the libraries listed below
Sorting:
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated 3 months ago
- ☆59Updated 3 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆81Updated 4 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆55Updated 8 months ago
- SingleCell Nanopore sequencing data analysis☆61Updated 5 months ago
- A list of alternative splicing analysis resources☆46Updated 7 months ago
- Tools for analyzing DNA methylation data☆44Updated last week
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated 2 months ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 3 weeks ago
- IDR☆30Updated 2 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated 2 weeks ago
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 4 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- RNA editing quantification in deep transcriptome data☆15Updated 3 months ago
- ☆33Updated last week
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- Demultiplexes a fastq.☆48Updated 4 years ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- ☆63Updated last month
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 7 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- Quantification of transposable element expression using RNA-seq☆76Updated last year
- ☆50Updated 4 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆50Updated 3 weeks ago