chrisquince / metag-rev-sup
metag-rev-sup
☆22Updated 7 years ago
Alternatives and similar repositories for metag-rev-sup:
Users that are interested in metag-rev-sup are comparing it to the libraries listed below
- IslandPath standalone software☆31Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆48Updated 2 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- ☆52Updated 3 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆23Updated 6 years ago
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 3 years ago
- Split Kmer Analysis☆63Updated 2 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- ☆36Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆44Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆51Updated 8 months ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- A tool for removing redundant genomes from a set of assemblies☆70Updated last year
- Taxonomic classification of viruses at Order and Family level☆19Updated last year
- Improvement of metagenome-assembled genomes☆50Updated 4 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Estimate metagenomic coverage and sequence diversity☆46Updated 5 months ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated 11 months ago
- tools for assessing the accuracy of genome assemblies☆34Updated 9 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆43Updated 4 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆37Updated 3 months ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- Gene-flank analysis tool☆26Updated last month
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated last year
- Improving genome bins through the combination of different binning programs☆31Updated last year