chrisquince / metag-rev-supLinks
metag-rev-sup
☆22Updated 8 years ago
Alternatives and similar repositories for metag-rev-sup
Users that are interested in metag-rev-sup are comparing it to the libraries listed below
Sorting:
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated 2 years ago
- ☆53Updated 4 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- A repository for the lessons and notebooks used for Binder tutorials☆14Updated 5 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆39Updated 2 months ago
- ☆37Updated 3 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Gene-flank analysis tool☆33Updated 10 months ago
- Analysing Metagenomic Species (MGS)☆42Updated 4 years ago
- ☆84Updated 2 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆45Updated 5 years ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated last month
- Detection of NCLDV signatures in 'omic data☆35Updated last year
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomi…☆67Updated 7 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- ☆21Updated 5 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 6 months ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- Estimate metagenomic coverage and sequence diversity☆56Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Updated 5 years ago
- Set of utilities on sequences and BAM files☆26Updated 4 years ago