StructureFold2
☆12Jun 25, 2022Updated 3 years ago
Alternatives and similar repositories for StructureFold2
Users that are interested in StructureFold2 are comparing it to the libraries listed below
Sorting:
- Very flexible tools for plotting and analyzing all kinds of RNA structure data☆16Feb 6, 2026Updated 3 weeks ago
- SHAPE-guided RNA structural homology search☆12Aug 12, 2025Updated 6 months ago
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆14Jul 3, 2012Updated 13 years ago
- R package that allows easily performing a complete Hi-C data analysis through a Graphical User Interface☆16Jan 26, 2021Updated 5 years ago
- ☆20Jul 16, 2024Updated last year
- Centroid RNA package☆19Oct 12, 2020Updated 5 years ago
- Integrative Python library for RNA Secondary Structure Analysis☆20Mar 26, 2025Updated 11 months ago
- 查看神经网络的秘密☆22Sep 7, 2019Updated 6 years ago
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated last month
- Classification of Single cells by Transfer Learning☆10Oct 11, 2025Updated 4 months ago
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 7 years ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- Code for TAD_SV project☆11Mar 16, 2022Updated 3 years ago
- A Nextflow DSL2 pipeline to perform ribo-seq data analysis and comprehensive quality control.☆19Dec 12, 2025Updated 2 months ago
- ☆12Dec 15, 2020Updated 5 years ago
- Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi☆12Jan 8, 2026Updated last month
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- Effective Attention Sheds Light On Interpretability - Findings of ACL2021☆11May 16, 2021Updated 4 years ago
- ☆11May 4, 2021Updated 4 years ago
- Semiautomated layout of RNA tertiary structure diagrams☆14Feb 26, 2025Updated last year
- Bayesian modelling approach for detecting RNA flexibility changes in high-throughput structure probing data under different conditions, b…☆11Dec 8, 2022Updated 3 years ago
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Apr 22, 2022Updated 3 years ago
- A unified and modular interface to homology modelling software☆12Sep 27, 2023Updated 2 years ago
- Source code for "Nucleosome plasticity is a critical element of chromatin liquid–liquid phase separation and multivalent nucleosome inter…☆13Jun 17, 2022Updated 3 years ago
- Draw RNA secondary structures in python.☆49Jun 24, 2025Updated 8 months ago
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆16Jan 20, 2026Updated last month
- omics data analysis using clusterProfiler ;)☆15Jun 6, 2024Updated last year
- Peak calling tool for CLIP-seq data☆14Apr 7, 2021Updated 4 years ago
- LoopPredictor: Predicting unknown enhancer-mediated genome topology by an ensemble machine learning model☆14Jun 18, 2021Updated 4 years ago
- Evolutionary Multiobjective Optimization Implementation in C++11☆11Aug 8, 2024Updated last year
- Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs☆11Dec 21, 2019Updated 6 years ago
- Profile and Heatmap Visualization by Using ggplot2 and grid☆12Nov 21, 2023Updated 2 years ago
- An advanced multi-agent framework for automating complex bioinformatics workflows.☆16Mar 18, 2025Updated 11 months ago
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆51Nov 23, 2023Updated 2 years ago
- ☆13Oct 7, 2019Updated 6 years ago
- A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries☆12Jan 22, 2020Updated 6 years ago
- a complete reference book for clusterProfiler and its sub-packages☆16Aug 12, 2021Updated 4 years ago
- Parallelised and automated construction of metagenomic classifier databases of different tools☆20Feb 20, 2026Updated last week
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆13Oct 15, 2025Updated 4 months ago