Pipeline for Ribosome Profiling Data
☆19Sep 3, 2026Updated 2 months ago
Alternatives and similar repositories for riboflow
Users that are interested in riboflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Nextflow DSL2 pipeline to perform ribo-seq data analysis and comprehensive quality control.☆22May 25, 2026Updated 5 months ago
- An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data☆13Jul 2, 2024Updated 2 years ago
- Detection of differential translated genes using Ribo-seq☆17Apr 10, 2021Updated 5 years ago
- Riborex: Fast and flexible identification of differential translation from Ribo-seq data☆12Apr 9, 2021Updated 5 years ago
- Transcript specific RNA splicing events lookup☆10Jun 22, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆17Apr 4, 2024Updated 2 years ago
- A comprehensive analysis tool for Ribo-seq and small RNA-seq data☆10Jun 22, 2020Updated 6 years ago
- uORF-Tools are a workflow and a collection of tools for the analysis of 'Upstream Open Reading Frames' (short uORFs)☆13Jul 30, 2019Updated 7 years ago
- Reproducible GSEA Benchmarking☆14Updated this week
- Nanopore 3' end-capture sequencing (Begik et al., Nat Methods 2022)☆16Aug 18, 2026Updated 2 months ago
- RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data☆24Oct 3, 2016Updated 10 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Analysis and Visualization of Ribosome Profiling Data☆12Dec 14, 2019Updated 6 years ago
- Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.☆18Jan 7, 2020Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆14Dec 16, 2022Updated 3 years ago
- CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.☆11Updated this week
- Seamlessly integrate R packages into Python.☆21Apr 12, 2023Updated 3 years ago
- Illumina Human Methylation EPIC annotation to use with IlluminaHumanMethylationEPICB5manifest and minfi☆11Jul 28, 2020Updated 6 years ago
- Metagenomics workflow from sequencing data to Metagenome-Assembled Genomes (MAGs)☆11May 27, 2022Updated 4 years ago
- Accompanying analysis code for the FRASER manuscript☆25Aug 27, 2020Updated 6 years ago
- ☆13Feb 16, 2019Updated 7 years ago
- Genome-wide assessment of differential translations with ribosome profiling data☆23May 6, 2025Updated last year
- Just Another JAva Package for Sequence Analysis☆27Dec 2, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆13Oct 9, 2026Updated 3 weeks ago
- Read nanopore sequence reads in real-time☆14Feb 9, 2017Updated 9 years ago
- Minotour API, web and client code☆30Mar 28, 2026Updated 7 months ago
- Determining tandem repeat lengths using raw nanopore signals.☆15Sep 11, 2023Updated 3 years ago
- UZH Epi/Biostat Methods Seminar Spring 2020: Deep Learning☆13May 7, 2020Updated 6 years ago
- Helper script for bioconductor/bioconductor_docker☆13May 19, 2026Updated 5 months ago
- ☆15Mar 18, 2016Updated 10 years ago
- Best practices for readable, sharable, and verifiable R code☆18Mar 26, 2019Updated 7 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆19Jan 16, 2026Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆17Nov 20, 2018Updated 7 years ago
- ☆30Mar 16, 2023Updated 3 years ago
- ☆13Apr 16, 2026Updated 6 months ago
- TE tools for TE RNASeq and smallRNASeq analysis with galaxy☆12Apr 2, 2021Updated 5 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆16Sep 11, 2020Updated 6 years ago
- A list of bioinformatic tools for working with Ribo-Seq data☆27Apr 11, 2024Updated 2 years ago
- ☆46Jul 6, 2017Updated 9 years ago