hsinyenwu / RiboPlotR
RiboPlotR package for Ribo-plot
☆14Updated last year
Alternatives and similar repositories for RiboPlotR:
Users that are interested in RiboPlotR are comparing it to the libraries listed below
- SingleCell Nanopore sequencing data analysis☆57Updated 3 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆22Updated last year
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 8 months ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- Tutorial Website☆58Updated 4 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago
- Estimation of Promoter Activity from RNA-Seq data☆51Updated 3 years ago
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆16Updated 3 weeks ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago
- Estimate locus specific human LINE-1 expression.☆33Updated 2 years ago
- Detection of differential translated genes using Ribo-seq☆15Updated 4 years ago
- Long-read Isoform Quantification and Analysis☆39Updated 2 weeks ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆23Updated this week
- ATAC-seq processing pipeline☆32Updated 3 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- Demultiplexes a fastq.☆44Updated 4 years ago
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆13Updated 7 years ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆17Updated 2 months ago
- bioinformatic pipeline for GLORI☆20Updated 10 months ago
- A list of alternative splicing analysis resources☆43Updated 2 weeks ago
- IDR☆31Updated 2 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- ☆23Updated 3 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆23Updated last year
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆20Updated last year
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- Links to ATAC-seq analysis tools☆65Updated 3 years ago