Meta-Omics Software for Community Analysis
☆37Nov 4, 2024Updated last year
Alternatives and similar repositories for MOSCA
Users that are interested in MOSCA are comparing it to the libraries listed below
Sorting:
- Automated pipeline for amplicon sequence analysis☆11Nov 25, 2025Updated 3 months ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆61Jul 28, 2024Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Mar 25, 2022Updated 3 years ago
- A tool for domain based annotation with databases from the Conserved Domains Database☆30Sep 20, 2024Updated last year
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆17Dec 30, 2025Updated 2 months ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆43Apr 8, 2024Updated last year
- ☆45Jun 27, 2023Updated 2 years ago
- genome sized sequences clustering☆17Dec 29, 2020Updated 5 years ago
- Repository for Bioinformatics scripts and basic programs developed by L.M.C☆10Jun 2, 2023Updated 2 years ago
- UniProt Id Mapping through API☆36Sep 22, 2025Updated 5 months ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Jun 28, 2021Updated 4 years ago
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆47Feb 5, 2026Updated last month
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- A taxonomic classifier for shotgun metagenomics reads☆11Apr 4, 2025Updated 11 months ago
- Comparative Metatranscriptomics Workflow☆10Jul 9, 2020Updated 5 years ago
- Microbiome profiling☆15Nov 20, 2025Updated 3 months ago
- Repository of sequences to annotate hydrocarbon-degrading genes/proteins from genomes/metagenomes☆12May 10, 2024Updated last year
- ☆15Feb 3, 2023Updated 3 years ago
- Bioinformatics Tools☆90Feb 27, 2026Updated last week
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆99Feb 8, 2026Updated 3 weeks ago
- The Mouse Gastrointestinal Bacteria Catalogue☆16Apr 14, 2022Updated 3 years ago
- Luslab nextflow modules☆14Apr 30, 2021Updated 4 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- ☆16Jun 18, 2020Updated 5 years ago
- CAMITAX: Taxon labels for microbial genomes☆31Dec 14, 2023Updated 2 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆62Mar 25, 2024Updated last year
- Batch effects removal for microbiome data via conditional quantile regression☆32Aug 23, 2022Updated 3 years ago
- Pipeline to run qiime2 with snakemake☆18Apr 17, 2020Updated 5 years ago
- gNOMO2 allows integrated multi-omics analyses of microbiomes☆15Aug 7, 2024Updated last year
- A Shotgun Metagenome Annotation Pipeline☆24Mar 24, 2017Updated 8 years ago
- A repo with just adapter sequences☆15Jul 7, 2025Updated 7 months ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Mar 31, 2022Updated 3 years ago
- MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.☆46Jan 26, 2026Updated last month
- A snakemake workflow for metagenomic projects☆15Feb 16, 2023Updated 3 years ago
- A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies☆38May 25, 2023Updated 2 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Apr 26, 2025Updated 10 months ago
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆17Feb 3, 2026Updated last month
- Repository of the integrated mouse gut metagenomic catalog☆20Mar 14, 2022Updated 3 years ago
- CCLasso: Correlation Inference for Compositional Data through Lasso☆16Jan 8, 2016Updated 10 years ago