jarojasva / HADEGLinks
Repository of sequences to annotate hydrocarbon-degrading genes/proteins from genomes/metagenomes
☆11Updated last year
Alternatives and similar repositories for HADEG
Users that are interested in HADEG are comparing it to the libraries listed below
Sorting:
- Bioinformatic Tools for study Evolution of metabolic diversity☆37Updated last year
- gutSMASH☆55Updated 2 months ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆31Updated 5 years ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets☆31Updated last month
- The Microbial Co-occurrence Network Explorer☆21Updated 2 years ago
- Protocol for finding informative protein families and then using them to score omic samples☆18Updated 3 years ago
- ☆30Updated 2 months ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆31Updated last year
- ☆41Updated 6 months ago
- An R package designed for drawing gene arrow maps☆92Updated 2 months ago
- ☆81Updated 2 weeks ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆43Updated 2 years ago
- Creating plasmid maps inside ggplot.☆88Updated 3 months ago
- Locate antiviral defence systems in prokaryotic genomes☆64Updated last year
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆50Updated 11 months ago
- http://huttenhower.sph.harvard.edu/waafle☆22Updated 11 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆67Updated 2 weeks ago
- Pipelines used in the lab.☆14Updated 8 months ago
- Comparative Metatranscriptomics Workflow☆10Updated 5 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated last month
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆39Updated 2 months ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆60Updated last year
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆60Updated 8 months ago
- Metagenomics-related extended functionalities to samtools☆22Updated 2 years ago
- Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes☆10Updated last year
- BEAV: Bacterial Element Annotation reVamped☆72Updated 3 months ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆22Updated 4 months ago