jarojasva / HADEGLinks
Repository of sequences to annotate hydrocarbon-degrading genes/proteins from genomes/metagenomes
☆12Updated last year
Alternatives and similar repositories for HADEG
Users that are interested in HADEG are comparing it to the libraries listed below
Sorting:
- ☆81Updated 2 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆39Updated last year
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆32Updated 2 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Updated 4 months ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 5 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆89Updated last year
- ☆31Updated this week
- ☆43Updated 7 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Updated last month
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 5 months ago
- Unified Human Gut Virome Catalog☆41Updated 2 months ago
- Metagenomics-related extended functionalities to samtools☆22Updated 2 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- CLI tool to annotate genes with KOfam☆88Updated 2 years ago
- BEAV: Bacterial Element Annotation reVamped☆73Updated 5 months ago
- An R package designed for drawing gene arrow maps☆95Updated 4 months ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆61Updated last year
- Pipeline for major biological analyses.☆36Updated 3 years ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆58Updated 7 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated 3 weeks ago
- ☆45Updated 2 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Updated 2 years ago
- A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets☆31Updated 2 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆76Updated 9 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆64Updated last month
- MAGinator - Accurate SNV calling and profiling of MAGs☆25Updated 8 months ago
- A listing of software, tools and databases useful for virome analysis☆59Updated this week
- Locate antiviral defence systems in prokaryotic genomes☆66Updated last year
- Materials and presentation for the 2023 ISB Microbiome course.☆24Updated last year
- Comparative Metatranscriptomics Workflow☆10Updated 5 years ago