AstrobioMike / bitLinks
Bioinformatics Tools
☆87Updated this week
Alternatives and similar repositories for bit
Users that are interested in bit are comparing it to the libraries listed below
Sorting:
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆74Updated 2 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆121Updated last year
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆32Updated 2 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆55Updated 3 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- Metatranscriptomics Tutorial☆62Updated last year
- ☆72Updated last month
- DDBJ Fast Annotation and Submission Tool☆79Updated last month
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆47Updated 2 months ago
- Materials and presentation for the 2023 ISB Microbiome course.☆24Updated 9 months ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated 10 months ago
- Course material for the metagenomics course☆44Updated 3 years ago
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 2 weeks ago
- Making whole bacterial genome sequencing data analysis easy☆107Updated 2 months ago
- A toolbox for comparative genomics.☆104Updated 4 years ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆67Updated last month
- Statistical analysis for sparse high-throughput sequencing☆69Updated 6 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆95Updated 2 months ago
- (Meta-)genome screening for functional and natural product gene sequences☆87Updated last week
- An R package designed for drawing gene arrow maps☆79Updated last week
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆71Updated last year
- Pipeline for metabolic annotation of microbial genomes☆149Updated 3 months ago
- Metagenomic classification of long-read sequencing data☆85Updated last month
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆95Updated 2 years ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆128Updated last month
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆77Updated 4 months ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆154Updated last week
- Kraken output generates a report for each datasets, this script takes these individual output and combines it to one file, where each col…☆23Updated 11 months ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago