AstrobioMike / bitLinks
Bioinformatics Tools
☆90Updated last week
Alternatives and similar repositories for bit
Users that are interested in bit are comparing it to the libraries listed below
Sorting:
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆77Updated 2 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- Making whole bacterial genome sequencing data analysis easy☆112Updated 5 months ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆58Updated last year
- ☆78Updated this week
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆123Updated last year
- An R package designed for drawing gene arrow maps☆90Updated last week
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆97Updated 2 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- CLI tool to annotate genes with KOfam☆86Updated 2 years ago
- Bioinformatics tool for Locus Visualisation☆124Updated 4 months ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆55Updated 3 years ago
- (Meta-)genome screening for functional and natural product gene sequences☆92Updated last week
- Collection of scripts for bacterial genomics☆48Updated 5 years ago
- IS mapping software☆56Updated 3 years ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆143Updated last month
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆83Updated 3 months ago
- Metagenomic classification of long-read sequencing data☆95Updated last month
- Download files from NCBI Entrez by accession☆129Updated last year
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆88Updated last year
- gutSMASH☆55Updated last week
- Metagenomics-related extended functionalities to samtools☆21Updated 2 years ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- Find clustered hits from a BLAST search☆121Updated 10 months ago
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 4 months ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆35Updated 2 years ago
- A toolbox for comparative genomics.☆104Updated 4 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- Development version of Easyfig☆100Updated last year
- Metatranscriptomics Tutorial☆64Updated 2 years ago