Bioinformatics Tools
☆92Aug 27, 2026Updated this week
Alternatives and similar repositories for bit
Users that are interested in bit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A user-friendly workflow for phylogenomics☆232Updated this week
- Strain-level haplotyping for metagenomes with short or long-reads.☆70Apr 10, 2025Updated last year
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆13Jan 23, 2026Updated 7 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆118Aug 5, 2026Updated 3 weeks ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆263May 13, 2026Updated 3 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Nov 24, 2025Updated 9 months ago
- Neptune: Genomic Signature Discovery☆22May 1, 2026Updated 4 months ago
- ☆25Feb 7, 2022Updated 4 years ago
- Identifying ViRal and Circular content in metAgenomes☆14Dec 13, 2018Updated 7 years ago
- ATLAS - Three commands to start analyzing your metagenome data☆407May 28, 2026Updated 3 months ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆220Apr 24, 2026Updated 4 months ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆110Jan 22, 2026Updated 7 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆55Jun 10, 2026Updated 2 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆26Jul 22, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆29Mar 16, 2026Updated 5 months ago
- The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacteria…☆49Apr 24, 2024Updated 2 years ago
- (Meta-)genome screening for functional and natural product gene sequences☆118Updated this week
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆182Aug 10, 2026Updated 3 weeks ago
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- Scripts to download genomes from the NCBI FTP servers☆1,083Apr 7, 2026Updated 4 months ago
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆112Oct 20, 2023Updated 2 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆56May 8, 2026Updated 3 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆316Feb 3, 2026Updated 6 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆90Oct 27, 2023Updated 2 years ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆94May 11, 2026Updated 3 months ago
- strain-level analysis tools☆41Oct 21, 2024Updated last year
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆79Jul 29, 2026Updated last month
- A tool for domain based annotation with databases from the Conserved Domains Database☆30May 26, 2026Updated 3 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆24May 14, 2023Updated 3 years ago
- Tools to analyze the differences and similarities between CRISPR arrays☆11Dec 17, 2024Updated last year
- TAXnomic Profile Aggregation and STAndardisation☆44May 2, 2026Updated 3 months ago
- Build a partitioned pangenome graph from microbial genomes☆313Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆339Aug 16, 2026Updated 2 weeks ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆17Mar 31, 2022Updated 4 years ago
- Discovery of conserved gene clusters in multiple genomes☆135Aug 21, 2026Updated last week
- Web content for Meren Lab☆12Aug 25, 2026Updated last week
- hybrid assembly and differential binning workflow for metagenomics, transcriptomics and pathway analysis☆71Feb 9, 2025Updated last year
- ☆27Jun 20, 2023Updated 3 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆79Dec 5, 2023Updated 2 years ago