AstrobioMike / bit
Bioinformatics Tools
☆83Updated this week
Alternatives and similar repositories for bit:
Users that are interested in bit are comparing it to the libraries listed below
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆71Updated last year
- FunGAP: fungal Genome Annotation Pipeline☆109Updated last year
- DDBJ Fast Annotation and Submission Tool☆79Updated this week
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆27Updated last year
- Making whole bacterial genome sequencing data analysis easy☆103Updated 3 months ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆57Updated 10 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆115Updated last year
- IS mapping software☆53Updated 3 years ago
- Bioinformatics tool for Locus Visualisation☆85Updated 2 weeks ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆52Updated 2 years ago
- A toolbox for comparative genomics.☆101Updated 3 years ago
- ☆79Updated last year
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆86Updated last year
- Scripts and libraries for Environmental Genomics☆37Updated last week
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆66Updated last week
- CLI tool to annotate genes with KOfam☆75Updated last year
- Download files from NCBI Entrez by accession☆119Updated 5 months ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 8 months ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆57Updated 5 years ago
- Pipeline for metabolic annotation of microbial genomes☆142Updated 7 months ago
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆97Updated last year
- ☆62Updated last month
- In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…☆82Updated 6 years ago
- Metatranscriptomics Tutorial☆60Updated last year
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆96Updated last week
- Development version of Easyfig☆93Updated last year
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆111Updated last month
- Course material for the metagenomics course☆43Updated 2 years ago