MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.
☆57Jan 26, 2026Updated 4 months ago
Alternatives and similar repositories for MGM
Users that are interested in MGM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Leviathan: A fast, memory-efficient, and scalable taxonomic and pathway profiler for (pan)genome-resolved metagenomics and metatranscript…☆24Jun 5, 2026Updated last week
- Unified Human Gut Virome Catalog☆47May 29, 2026Updated 2 weeks ago
- A deep learning approach that leverages language processing neural network model to accurately identify known BGCs and extrapolate novel …☆26Jan 9, 2026Updated 5 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆21Mar 25, 2022Updated 4 years ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆44Apr 8, 2024Updated 2 years ago
- Rapidly extract reads from FASTX files based on taxonomic classification via Kraken2.☆13Updated this week
- A possible implementation of paper "Towards Effective Bug Reproduction for Mobile Applications"☆18Jan 6, 2024Updated 2 years ago
- ☆64Feb 27, 2024Updated 2 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆44Sep 3, 2024Updated last year
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Jun 4, 2026Updated last week
- Bioinformatics program inStrain☆188Mar 12, 2026Updated 3 months ago
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Apr 30, 2026Updated last month
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆29Jan 15, 2026Updated 5 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 3 months ago
- ☆27Jan 30, 2025Updated last year
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆51May 5, 2026Updated last month
- Fast and space-efficient taxonomic classification of long reads☆45Aug 25, 2025Updated 9 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆21Nov 15, 2022Updated 3 years ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆53Jun 10, 2026Updated last week
- Microbiome profiling☆15Nov 20, 2025Updated 6 months ago
- Repository for codes, analyses and visualizations for the CAMI II challenges☆14Sep 4, 2023Updated 2 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆107Jun 5, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets☆25Apr 17, 2025Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆59Jan 7, 2026Updated 5 months ago
- Tool for exploring sequence alignment algorithms☆14Aug 30, 2024Updated last year
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆109May 23, 2025Updated last year
- A functional profiler for metagenomes using FracMinHash☆21Apr 20, 2026Updated last month
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Updated this week
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Feb 16, 2026Updated 4 months ago
- The viral taxonomic assignment pipeline☆44Apr 16, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A set of programs for the taxonomic analysis of genetic sequences☆15Jun 12, 2023Updated 3 years ago
- software to identify primers that can distinguish genomes☆20Jan 23, 2026Updated 4 months ago
- Precise host read removal☆124Apr 13, 2026Updated 2 months ago
- MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG stand…☆16Aug 28, 2024Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆311Feb 3, 2026Updated 4 months ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆189Updated this week
- TransAnnot - a fast transcriptome annotation pipeline☆20Jan 22, 2025Updated last year