jiwoongbio / FMAPLinks
Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies
☆26Updated 2 years ago
Alternatives and similar repositories for FMAP
Users that are interested in FMAP are comparing it to the libraries listed below
Sorting:
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 9 months ago
- Metagenomics Workshop☆28Updated 8 years ago
- ☆23Updated 7 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 7 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆58Updated last year
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 8 months ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 5 years ago
- Rapid and scalable homolog identification for bacterial genomes☆33Updated 6 years ago
- Classifier for metagenomic sequences☆29Updated 6 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆45Updated 5 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated 2 years ago
- ☆41Updated 7 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- Genome wide orthology inference and dNdS estimation☆96Updated last month
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆63Updated 2 years ago
- Database of genomes integrated from the gut microbiome and other environments☆44Updated 2 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Visualize whole genome alignments as linear maps☆73Updated 2 months ago
- ☆40Updated 4 years ago
- MEGAN Community Edition☆72Updated last year