jiwoongbio / FMAPLinks
Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies
☆26Updated 2 years ago
Alternatives and similar repositories for FMAP
Users that are interested in FMAP are comparing it to the libraries listed below
Sorting:
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- ☆23Updated 6 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- ☆22Updated 5 years ago
- A repository for the lessons and notebooks used for Binder tutorials☆14Updated 4 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Metagenomics Workshop☆28Updated 8 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 7 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 5 years ago
- Classifier for metagenomic sequences☆29Updated 6 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 5 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 5 years ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Updated last year
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆30Updated 5 months ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 3 years ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆30Updated 2 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 2 months ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Protein Alignment and Detection Interface☆61Updated last year