Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies
☆26Feb 28, 2023Updated 3 years ago
Alternatives and similar repositories for FMAP
Users that are interested in FMAP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Metagenomics Analysis Tools☆24May 7, 2018Updated 7 years ago
- ☆11Feb 9, 2024Updated 2 years ago
- Python3 wrapper for parallelized gene prediction using Prodigal☆11Mar 3, 2023Updated 3 years ago
- Metagenomics Workshop 2014-5-21 to 2014-5-23 at SciLifeLab, Stockholm☆18May 23, 2014Updated 11 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆49Apr 14, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Guide to transcriptome assembly & analysis☆21Apr 12, 2017Updated 9 years ago
- Latest MOCAT2 version☆18Mar 8, 2021Updated 5 years ago
- R scripts and tutorial datasets to detect conditionally rare taxa in time series of microbial communities☆20Jul 14, 2020Updated 5 years ago
- A pipeline for the identification of fungi in public metagenomics datasets☆17Nov 23, 2020Updated 5 years ago
- Altered version of PathoFact to work more conveniently with SLURM and large input files☆14Nov 7, 2024Updated last year
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Feb 7, 2018Updated 8 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Oct 5, 2015Updated 10 years ago
- A toolset for handling sequencing data with unique molecular identifiers (UMIs)☆17Jul 13, 2018Updated 7 years ago
- ☆57Apr 8, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆59Feb 7, 2026Updated 2 months ago
- MiGA: Microbial Genomes Atlas☆33Mar 19, 2026Updated 3 weeks ago
- HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq☆11Sep 1, 2015Updated 10 years ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆11Jan 15, 2021Updated 5 years ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆23Jun 3, 2025Updated 10 months ago
- ☆23Jun 29, 2018Updated 7 years ago
- Introduction to Python3☆11Oct 26, 2020Updated 5 years ago
- Bremges et al. (2015). GigaScience, 4:33.☆12Dec 29, 2023Updated 2 years ago
- 宏基因组、代谢组和表型信息关联分析☆11Nov 15, 2018Updated 7 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Jun 26, 2024Updated last year
- Merging assemblies by using adjacency algebraic model and classification☆22Jun 17, 2023Updated 2 years ago
- New version☆34Dec 12, 2016Updated 9 years ago
- Meta-Omics Software for Community Analysis☆37Nov 4, 2024Updated last year
- Calculates the lowest common ancestors of each query sequence in a Blast result☆32Oct 25, 2017Updated 8 years ago
- Reduced Alphabet based Protein similarity Search☆40Nov 30, 2020Updated 5 years ago
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆17Dec 30, 2025Updated 3 months ago
- ☆72Mar 10, 2024Updated 2 years ago
- SWORD - a highly efficient protein database search☆26Jan 15, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- extract 454 Genome Sequencer reads from a SFF file and convert them into a FASTQ formatted output☆37Aug 24, 2015Updated 10 years ago
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 4 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Jul 3, 2021Updated 4 years ago
- Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data☆14Dec 24, 2023Updated 2 years ago
- ☆14Jun 24, 2019Updated 6 years ago
- Comparative Metatranscriptomics Workflow☆10Jul 9, 2020Updated 5 years ago
- DAS Tool☆171May 2, 2024Updated last year