Alternatives and similar repositories for REPdenovo

Users that are interested in REPdenovo are comparing it to the libraries listed below

• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated 2 years ago
• Nucleomics-VIB / bionano-tools
  Custom tools to 'facilitate' BioNano Genomics data analysis
  ☆34Updated 7 years ago
• lh3 / htsbox
  My experimental tools on top of htslib. NOT OFFICIAL!!!
  ☆58Updated 4 months ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆51Updated 6 years ago
• fritzsedlazeck / SVCollector
  Method to optimally select samples for validation and resequencing
  ☆29Updated 4 years ago
• uio-bmi / two_step_graph_mapper
  ☆21Updated 6 years ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆33Updated 4 years ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆47Updated 4 years ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆33Updated 2 years ago
• AppliedBioinformatics / runBNG
  An easy way to run BioNano genomic analysis
  ☆28Updated 4 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• benedictpaten / marginPhase
  ☆35Updated 5 years ago
• bergmanlab / TELR
  TELR is a fast non-reference transposable element detector from long read sequencing data.
  ☆35Updated 2 years ago
• TravisWheelerLab / ULTRA
  ULTRA Locates Tandemly Repetitive Areas
  ☆40Updated 2 months ago
• arnederoeck / NanoSatellite
  Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.
  ☆32Updated 5 years ago
• llecompte / SVJedi
  SV genotyping with long reads
  ☆40Updated 2 years ago
• mcfrith / tandem-genotypes
  ☆51Updated last year
• smehringer / SViper
  Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.
  ☆32Updated 3 years ago
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆27Updated 3 years ago
• kuleshov / architect
  Scaffolding genomes using synthetic long read clouds
  ☆20Updated 9 years ago
• wen-biao / OM-HiC-scaffolding
  Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data
  ☆20Updated 5 years ago
• MeHelmy / princess
  ☆83Updated 10 months ago
• thegenemyers / DASCRUBBER
  Alignment-based Scrubbing pipeline
  ☆21Updated last year
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 5 years ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆49Updated 4 years ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆53Updated 10 months ago
• Nextomics / nextsv
  ☆36Updated last year
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago
• vgteam / sv-genotyping-paper
  ☆31Updated 6 years ago