simoncchu / REPdenovoLinks
A tool to construct repeats directly from raw reads
☆17Updated 4 years ago
Alternatives and similar repositories for REPdenovo
Users that are interested in REPdenovo are comparing it to the libraries listed below
Sorting:
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Updated 7 years ago
- ☆49Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 7 months ago
- ☆21Updated 5 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated last month
- ☆35Updated 5 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 4 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆35Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- ☆36Updated last year
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆34Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated last month
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- ☆81Updated 7 months ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago