simoncchu / REPdenovo
A tool to construct repeats directly from raw reads
☆16Updated 3 years ago
Alternatives and similar repositories for REPdenovo
Users that are interested in REPdenovo are comparing it to the libraries listed below
Sorting:
- ☆21Updated 5 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated 11 months ago
- An easy way to run BioNano genomic analysis☆27Updated 4 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆20Updated 6 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- Alignment-based Scrubbing pipeline☆20Updated last year
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 4 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- ☆34Updated last year
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- ☆34Updated 5 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year
- SV genotyping with long reads☆40Updated last year
- A long-read analysis toolbox for cancer and population genomics☆23Updated 3 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated 7 months ago
- source code of the paper "RepLong - de novo repeat discovery from long reads"☆16Updated 4 months ago