simoncchu / REPdenovoLinks
A tool to construct repeats directly from raw reads
☆17Updated 4 years ago
Alternatives and similar repositories for REPdenovo
Users that are interested in REPdenovo are comparing it to the libraries listed below
Sorting:
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Method to optimally select samples for validation and resequencing☆29Updated 4 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Updated 7 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 2 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 4 years ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- ☆49Updated last year
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 3 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated 2 months ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- ☆21Updated 6 years ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Updated 2 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 8 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- ULTRA Locates Tandemly Repetitive Areas☆35Updated 3 weeks ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- ☆31Updated 5 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆21Updated 3 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 3 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆33Updated last year