simoncchu / REPdenovo
A tool to construct repeats directly from raw reads
☆16Updated 3 years ago
Alternatives and similar repositories for REPdenovo:
Users that are interested in REPdenovo are comparing it to the libraries listed below
- Method to optimally select samples for validation and resequencing☆27Updated 3 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- ☆21Updated 5 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- assembly evaluation tool☆34Updated 2 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Improved Phased Assembler☆27Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- Segmental Duplication Assembler (SDA).☆44Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 3 years ago
- ☆29Updated 2 years ago
- Convert HAL to VG☆21Updated 5 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 9 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- A box of genomics tools☆21Updated 4 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 3 months ago
- Visualising discordant reads☆15Updated 9 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆20Updated 6 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago
- ☆27Updated 5 months ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- A tool for recovering synteny blocks from multiple alignment☆29Updated 3 years ago
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- MapOptics is a lightweight cross-platform tool that enables the user to visualise and interact with the alignment of Bionano optical mapp…☆17Updated 2 years ago