hoelzer-lab / rnaflowLinks
A simple RNA-Seq differential gene expression pipeline using Nextflow
☆100Updated 2 months ago
Alternatives and similar repositories for rnaflow
Users that are interested in rnaflow are comparing it to the libraries listed below
Sorting:
- A small-RNA sequencing analysis pipeline☆94Updated 4 months ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆82Updated this week
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆106Updated 4 months ago
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆94Updated 4 months ago
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆47Updated 2 years ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆115Updated last year
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆138Updated last month
- FEELnc : FlExible Extraction of LncRNA☆90Updated 2 months ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- ☆104Updated 2 months ago
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆107Updated last month
- Match up paired end fastq files quickly and efficiently.☆152Updated last year
- Learning the Variant Call Format☆144Updated 2 months ago
- Analysis pipeline for the GUIDE-seq assay.☆80Updated 2 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- What should perfect bioinformatic tools be like?☆134Updated last week
- Variant Calling Pipeline Using GATK4 and Nextflow☆58Updated 2 years ago
- ☆50Updated 4 years ago
- Check strandedness of RNA-Seq fastq files☆125Updated 3 years ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆88Updated 2 months ago
- Various bioinformatics tutorials☆61Updated 2 years ago
- Sequana: a set of Snakemake NGS pipelines☆146Updated 2 months ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆66Updated 3 weeks ago
- optimization of ribosome P-site positioning in ribosome profiling data☆54Updated 7 months ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆219Updated last month
- Fast, efficient RNA-Seq metrics for quality control and process optimization☆175Updated 11 months ago
- Nextflow training material for introductory tutorial☆107Updated 3 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Issue tracker for the Biostar Handbook☆64Updated 3 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆136Updated 2 years ago