hoelzer-lab / rnaflowLinks
A simple RNA-Seq differential gene expression pipeline using Nextflow
☆102Updated last month
Alternatives and similar repositories for rnaflow
Users that are interested in rnaflow are comparing it to the libraries listed below
Sorting:
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆81Updated last week
- A small-RNA sequencing analysis pipeline☆89Updated 2 months ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆113Updated last year
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆93Updated 2 months ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆87Updated last week
- What should perfect bioinformatic tools be like?☆129Updated 3 months ago
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆106Updated 5 years ago
- Various bioinformatics tutorials☆61Updated last year
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆106Updated last month
- Match up paired end fastq files quickly and efficiently.☆151Updated last year
- Config files used to define parameters specific to compute environments at different Institutions☆103Updated last week
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆45Updated 2 years ago
- A C++ drop-in replacement of FastQC to assess the quality of sequence read data☆115Updated 8 months ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆132Updated last month
- FEELnc : FlExible Extraction of LncRNA☆90Updated 2 weeks ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆105Updated 2 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆116Updated 6 months ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆66Updated 2 weeks ago
- ☆50Updated 4 years ago
- RNA-Seq analysis workflow☆104Updated 4 years ago
- Fast, efficient RNA-Seq metrics for quality control and process optimization☆169Updated 9 months ago
- Fast and flexible ORF finder☆73Updated 3 years ago
- Analysis pipeline for the GUIDE-seq assay.☆78Updated 2 years ago
- ☆99Updated last week
- Tips for Nextflow and cheatsheet for channel operation☆78Updated 11 months ago
- Check strandedness of RNA-Seq fastq files☆125Updated 2 years ago
- Discovering known and novel miRNAs from small RNA sequencing data☆152Updated 11 months ago
- GATK RNA-Seq Variant Calling in Nextflow☆134Updated 2 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆56Updated 2 years ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated this week