RNA-seq, QC and differential analysis pipeline
☆18Aug 27, 2026Updated 2 months ago
Alternatives and similar repositories for rnaseq
Users that are interested in rnaseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Mar 2, 2024Updated 2 years ago
- Common utilities to ease the development of Python packages☆12Oct 12, 2026Updated 2 weeks ago
- A web application framework for analysis and visualization of High throughput Sequencing metagenomic data☆10Nov 21, 2016Updated 9 years ago
- ☆29Oct 9, 2026Updated 3 weeks ago
- Generating tool descriptors from bio.tools☆10Jun 13, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Metagenomic AnalySis with QUantitative pipEline☆12Apr 24, 2019Updated 7 years ago
- An image analysis tool for measuring microorganism colony growth☆12Dec 12, 2025Updated 10 months ago
- Sequana: a set of Snakemake NGS pipelines☆151Oct 5, 2026Updated 3 weeks ago
- ☆12May 12, 2019Updated 7 years ago
- Integrative virome pipeline☆14Nov 4, 2024Updated last year
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆26Nov 14, 2025Updated 11 months ago
- Tips and tricks for plotting in python☆28Nov 27, 2018Updated 7 years ago
- FLASH (Fast Length Adjustment of SHort reads); mirror of https://git.code.sf.net/p/flashpage/code☆16Mar 6, 2018Updated 8 years ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆61Sep 23, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Tutorial of Writing R Packages a Modern Workflow for beginners☆15Feb 17, 2021Updated 5 years ago
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆395Oct 23, 2026Updated last week
- ☆11Oct 23, 2024Updated 2 years ago
- Snakemake implementation of protein structure alignment software DaliLite v5☆16Mar 12, 2025Updated last year
- SKADI: Sequence-based Knowledgebase for Annotation, Detection, and Identification☆13Jun 16, 2026Updated 4 months ago
- A Python interface to the Ensembl REST APIs, biological data at your fingertips.☆11Apr 17, 2024Updated 2 years ago
- ☆12Oct 3, 2023Updated 3 years ago
- In Silico Virtual Knockout Engine for Bulk RNA-seq Cohorts☆18Apr 2, 2026Updated 6 months ago
- Annotation Extraction Genomic Integration Suite (AEGIS) is a powerful and flexible Python-based suite for the manipulation, analysis, and…☆15Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆24Apr 17, 2025Updated last year
- Nextstrain build for mpox virus☆50Oct 19, 2026Updated last week
- ZGA prokaryotic genome assembly and annotation pipeline☆13Sep 13, 2024Updated 2 years ago
- Goalign : a set of command line tools and an API to manipulate multiple sequence alignments.☆91Aug 24, 2026Updated 2 months ago
- Tools for working with Variant Call Format files.☆11Jul 2, 2026Updated 3 months ago
- Detecting recombination of viral lineages☆11Dec 23, 2025Updated 10 months ago
- A Swiss-Army-Knife for Bioinformaticians☆15Jul 26, 2026Updated 3 months ago
- Phylogenetic tools for Eco-phylogenetics☆16Oct 10, 2024Updated 2 years ago
- Série de hackathons pour la reproductibilité - Une action MaDICS ReproVirtuFlow☆12Apr 20, 2020Updated 6 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Basic notebook checks. Do they run? Do they contain lint?☆17Sep 26, 2025Updated last year
- Visualize microbial evolution at the SNP level!☆18Aug 12, 2025Updated last year
- Phylogenomic species tree inference under gene duplication and loss☆13Sep 20, 2026Updated last month
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Jun 22, 2016Updated 10 years ago
- Characterization of 3D plant development for graminae crops☆23Updated this week
- ☆11Sep 16, 2021Updated 5 years ago
- BLAST-like algorithm for R based on the nsearch library (https://github.com/stevschmid/nsearch)☆15Apr 24, 2026Updated 6 months ago