sequana / rnaseq
RNA-seq, QC and differential analysis pipeline
☆17Updated 6 months ago
Alternatives and similar repositories for rnaseq:
Users that are interested in rnaseq are comparing it to the libraries listed below
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆34Updated 9 months ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆24Updated last year
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 7 months ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- Master of Pores 2☆23Updated 4 months ago
- 🍶 Genome assembly with short sequence reads☆25Updated last year
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆21Updated 6 months ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆40Updated 3 years ago
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Updated 4 years ago
- pathway based data integration and visualization☆41Updated last month
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆32Updated 11 months ago
- MGKit: Metagenomics Framework☆17Updated 2 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 11 months ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated last week
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 9 months ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Evolutionary Transcriptomics with R☆42Updated 3 weeks ago
- Ultra-efficient taxonomic mapping of NGS data☆51Updated 4 years ago
- toolkit to process gtf files☆17Updated 3 years ago
- Digenome-toolkit ver2.☆16Updated 3 years ago
- ☆26Updated 4 years ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 2 years ago
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆8Updated last year
- new repo☆28Updated 3 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- Automatically design multiplex PCR primer pairs for diverse templates☆26Updated 11 months ago
- ☆21Updated 11 months ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆36Updated last month
- This repository hosts a large collection of Nextflow snippets☆57Updated 3 months ago