ataudt / aneufinderLinks
Find CNVs in single cell sequencing data.
☆18Updated 2 years ago
Alternatives and similar repositories for aneufinder
Users that are interested in aneufinder are comparing it to the libraries listed below
Sorting:
- Filtering of PDX samples for mouse derived reads☆28Updated last week
- An R package to time somatic mutations☆65Updated 5 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Reference transcriptome indices build from kallisto for popular organisms☆45Updated 2 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆53Updated 5 months ago
- Single Cell Analysis Automated Workflow☆28Updated 2 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆38Updated 3 years ago
- R package for robust clustering of single cell RNA sequencing data☆39Updated 2 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- ☆17Updated 7 years ago
- ATAC-seq processing pipeline☆34Updated 3 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated last year
- GLASS consortium☆42Updated 5 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 3 months ago
- An R package to plot maps of clone distributions in somatic evolution☆18Updated 2 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆50Updated 6 months ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆95Updated last month
- ATAC-seq Quality Control☆25Updated 2 months ago
- ☆41Updated 7 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 5 years ago