Find CNVs in single cell sequencing data.
☆18Apr 4, 2026Updated last week
Alternatives and similar repositories for aneufinder
Users that are interested in aneufinder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- Workflow: Convert CONTROL-freec output to GISTIC2☆10Apr 20, 2021Updated 4 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Aug 22, 2017Updated 8 years ago
- Efficiently compute robust markers across single-cell datasets☆12Apr 21, 2021Updated 4 years ago
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆13Feb 13, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R package for tissue-specific gene enrichment☆16Mar 10, 2022Updated 4 years ago
- Probabilistic pseudotime for single-cell RNA-seq data☆11Oct 6, 2017Updated 8 years ago
- SCCNV: a software tool for identifying copy number variation from single-cell whole-genome sequencing☆13Jul 21, 2020Updated 5 years ago
- Chromatin States Map in mouse embryonic stem cell☆19Apr 11, 2018Updated 8 years ago
- Collection of standard analytical pipelines for genomic and transcriptomic data☆16Updated this week
- SLICER algorithm for inferring cell trajectories. See details in Welch et al., Genome Biology 2016: http://genomebiology.biomedcentral.co…☆15Oct 17, 2017Updated 8 years ago
- R package for robust clustering of single cell RNA sequencing data☆40Jul 10, 2023Updated 2 years ago
- BISulfite-seq CUI Toolkit☆26Feb 17, 2026Updated last month
- Integrated workflow for SV calling from single-cell Strand-seq data☆26Apr 6, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- code for 'Cell Types of Origin of the Cell Free Transcriptome' by Vorperian et al☆17Feb 22, 2022Updated 4 years ago
- Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models☆23Oct 22, 2018Updated 7 years ago
- ☆51Jan 4, 2023Updated 3 years ago
- R Package for phasing of single cell Strand-seq data☆10Jan 14, 2025Updated last year
- ☆27Sep 26, 2024Updated last year
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆11Jul 29, 2023Updated 2 years ago
- A Pedantic FASTA Parser and Tool Set☆14Apr 22, 2020Updated 5 years ago
- Enabling differential allele-specific analysis☆11Dec 28, 2024Updated last year
- Foundation of vector-like and list-like containers in Bioconductor☆17Apr 4, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Extension of SpatialExperiment with sf☆57Apr 7, 2026Updated last week
- Documentation for data model of ClinGen☆11Jul 5, 2018Updated 7 years ago
- Imputation of single cell RNA-sequencing data with autoencoder☆16Jun 23, 2021Updated 4 years ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆173Jan 28, 2026Updated 2 months ago
- ☆20Jun 8, 2023Updated 2 years ago
- CoRAL: Reconstruction of focal amplifications with long reads☆24Apr 7, 2026Updated last week
- Basics of the OSCA book☆14Sep 29, 2025Updated 6 months ago
- Tools for working with Variant Call Format files.☆12Jan 22, 2026Updated 2 months ago
- a bioinformatics tool for simulating single-cell genome sequencing data☆10Dec 19, 2019Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- An R package for predicting HR deficiency from mutation contexts☆30Feb 13, 2025Updated last year
- Collection of code for the GESTALT fate mapping paper using the CRISPR/Cas9 system☆24Jan 8, 2018Updated 8 years ago
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆11Mar 11, 2020Updated 6 years ago
- Preprocessing sequencing data for allele-specific analysis☆12Mar 11, 2025Updated last year
- See https://github.com/LTLA/SingleRBook for the latest version of this content.☆12Jun 21, 2022Updated 3 years ago
- Optimise PCR primer-set grouping for genetics research☆18Feb 24, 2026Updated last month
- Ordering gene-expression and functional events in single-cell experiments☆30Mar 7, 2026Updated last month