NCGG-MGC / IMSindel
IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis
☆16Updated last year
Alternatives and similar repositories for IMSindel:
Users that are interested in IMSindel are comparing it to the libraries listed below
- Two pass alignment for long reads☆22Updated 4 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆27Updated 10 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated last month
- Integrative analysis of complex structural variants☆21Updated 4 years ago
- CNV Rapid Aberration Detection And Reporting☆12Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- structure detection program☆17Updated 5 months ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated 9 months ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated last year
- CNV detection tool for targeted NGS panel data☆16Updated 3 years ago
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆22Updated last year
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- Specific Transposable Element Aligner (HERV-K)☆16Updated 5 years ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated 8 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆31Updated 2 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 9 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated 2 months ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 4 years ago
- v2.x of the microassembly based somatic variant caller☆20Updated last month
- A transposition caller.☆10Updated last year
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆12Updated 3 years ago
- a pipeline for accurate detection of methylated cytosine and differentially methylated regions☆9Updated 9 years ago
- ☆14Updated 6 years ago
- ☆9Updated 3 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 2 weeks ago
- A deletion finder through re-aligning the whole soft-clipping read☆12Updated 8 years ago