Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models
☆23Oct 22, 2018Updated 7 years ago
Alternatives and similar repositories for pdx_exomeseq
Users that are interested in pdx_exomeseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CellNet, for cancer☆10Jul 14, 2022Updated 3 years ago
- call copy number from WES(WXS)☆11May 10, 2021Updated 4 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Aug 25, 2020Updated 5 years ago
- Building classifiers using cancer transcriptomes across 33 different cancer-types☆123Apr 30, 2019Updated 6 years ago
- A computational method for comparing cellular profiles with the flexibility to place a higher weight on functional features of interest.☆12Jan 31, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Building the constrained coding regions (CCR) model☆16Dec 19, 2018Updated 7 years ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- Exercises for training scientists to perform some RNA-seq analyses.☆11Oct 7, 2019Updated 6 years ago
- Chromatin States Map in mouse embryonic stem cell☆19Apr 11, 2018Updated 7 years ago
- ☆13Jul 18, 2019Updated 6 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 4 years ago
- ☆19Feb 20, 2018Updated 8 years ago
- ☆12Apr 26, 2020Updated 5 years ago
- Workflow: Convert CONTROL-freec output to GISTIC2☆10Apr 20, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- VirusScan Pipeline☆12Feb 7, 2026Updated last month
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 13 years ago
- Compute mean telomere length from Whole Genome Sequencing data.☆15Feb 15, 2024Updated 2 years ago
- R scripts used for MYC analyses☆10Jan 30, 2018Updated 8 years ago
- ☆19Jun 23, 2020Updated 5 years ago
- ☆10Apr 10, 2016Updated 9 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆28Jan 9, 2021Updated 5 years ago
- A continually expanding collection of cancer genomics notes and data☆118Feb 6, 2026Updated last month
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆54Feb 12, 2018Updated 8 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆23Feb 17, 2023Updated 3 years ago
- Aggregation and analyses of rare CNVs across diseases☆15Jan 25, 2023Updated 3 years ago
- ☆15Sep 20, 2022Updated 3 years ago
- Reusable scripts and functions archive for the paper "Organoid single-cell genomic atlas uncovers human-specific features of brain develo…☆38Aug 2, 2021Updated 4 years ago
- Find CNVs in single cell sequencing data.☆18Apr 4, 2023Updated 2 years ago
- Toolkit and workbench for Brain Computer Interface (BCI) software development, for Python. Modular design built to play well with Machine…☆16Apr 19, 2017Updated 8 years ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Jul 10, 2019Updated 6 years ago
- An integrated analysis toolkit and pipeline for Next-Generation Sequencing (NGS) panel sequencing data☆14Aug 16, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆35Sep 28, 2020Updated 5 years ago
- A package for reference mapping and nice visualization☆24Dec 16, 2025Updated 3 months ago
- SigMa is a probabilistic model for the sequential dependencies of mutation signatures☆17Jul 27, 2019Updated 6 years ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆15Jul 15, 2016Updated 9 years ago
- Using knowledge states of 100K+ students to predict whether a student will answer a question correctly.☆15Jan 22, 2021Updated 5 years ago
- Client for the Cromwell workflow engine☆17Mar 7, 2024Updated 2 years ago
- ☆19Mar 14, 2022Updated 4 years ago