A pipeline for primary analysis of shotgun metagenomic sequencing data
☆11Jun 10, 2019Updated 6 years ago
Alternatives and similar repositories for shotgun-metagenomics-pipeline
Users that are interested in shotgun-metagenomics-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 9 years ago
- Repository to reproduce analyses from manuscript titled "Noninvasive blood tests for fetal development predict gestational age and preter…☆11May 13, 2023Updated 2 years ago
- ☆14Oct 3, 2017Updated 8 years ago
- A flexible tool for the multi-resolution localization of causal variants across the genome☆11Feb 19, 2021Updated 5 years ago
- Workflows for metagenomic sequence data processing and analysis.☆16Jul 30, 2019Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- metag-rev-sup☆22Jun 21, 2017Updated 8 years ago
- Obsolete!! Begin to turn to PrimerServer2☆10Jul 22, 2019Updated 6 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Oct 27, 2022Updated 3 years ago
- ☆11Mar 10, 2024Updated 2 years ago
- A tool for agile functional analysis of shotgun metagenomic data☆24Sep 15, 2024Updated last year
- GBWT-based handle graph☆31Mar 17, 2026Updated last week
- Removing PCR duplicates for sequencing reads.☆14Sep 8, 2020Updated 5 years ago
- A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data☆12Apr 25, 2023Updated 2 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Sep 28, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- A taxonomic classifier for shotgun metagenomics reads☆11Apr 4, 2025Updated 11 months ago
- Microbial analysis in TCGA data☆94Feb 23, 2024Updated 2 years ago
- ☆21Feb 13, 2020Updated 6 years ago
- A cross-package Bioconductor workflow for analysing methylation array data☆11Mar 31, 2017Updated 8 years ago
- Critical downstream analysis steps for single-cell RNA sequencing data☆13Feb 21, 2021Updated 5 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- FM-index for full-text search☆20Nov 20, 2021Updated 4 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30May 10, 2018Updated 7 years ago
- Targeted Amplicon Bisulfite Sequencing Analysis Tool☆11May 8, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture☆12Sep 22, 2022Updated 3 years ago
- R package for systems biology modeling☆17May 13, 2017Updated 8 years ago
- RRSelection: A linkage disequilibrium method to detect selection region across population VCF☆14Feb 11, 2019Updated 7 years ago
- Metagenomics Workshop☆27Nov 23, 2016Updated 9 years ago
- Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences☆11Sep 3, 2025Updated 6 months ago
- programmable access to GM repo☆29May 16, 2023Updated 2 years ago
- ☆34Sep 5, 2024Updated last year
- Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.☆14Nov 26, 2023Updated 2 years ago
- the toolbox for Microbial and personalized GEM, REactiobiome and community NEtwork modelling☆11Feb 3, 2024Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- 通过图像统计细胞个数分析☆13Sep 1, 2019Updated 6 years ago
- PgRC: Pseudogenome based Read Compressor