Alternatives and similar repositories for gtex-tutorials

Users that are interested in gtex-tutorials are comparing it to the libraries listed below

• jbryois / scRNA_disease
  Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1
  ☆18Updated 5 years ago
• Kyoko-wtnb / FUMA_scRNA_data
  Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)
  ☆24Updated 6 years ago
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆55Updated last week
• LieberInstitute / 10xPilot_snRNAseq-human
  10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC
  ☆25Updated 3 years ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated 7 months ago
• massonix / tabula_muris_networks
  R markdown notebooks for the Tabula Muris network analysis in Iacono et al. (2019)
  ☆12Updated 4 years ago
• cozygene / TCA
  ☆19Updated 4 years ago
• powellgenomicslab / onek1k_phase1
  Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types
  ☆39Updated 4 years ago
• clagiamba / moloc
  ☆38Updated 5 years ago
• qianhuiSenn / scRNA_cell_deconv_benchmark
  Evaluation of Cell Type Annotation R Packages on Single Cell RNA-seq Data
  ☆29Updated last year
• meritxellop / eGTEx_mQTLs_eQTLs_GWAS
  ☆23Updated 3 years ago
• wuyangf7 / OPERA
  This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…
  ☆35Updated last year
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆47Updated 2 years ago
• xtonyjiang / GNOVA
  A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.
  ☆31Updated last year
• hakyimlab / scPrediXcan
  ☆40Updated 3 weeks ago
• RMolania / TCGA_PanCancer_UnwantedVariation
  ☆48Updated last year
• szhang1112 / scPRS
  ☆33Updated 10 months ago
• hbliu / Kidney_Epi_Pri
  Kidney Epigenome and Transcriptome-based multi-stage Prioritization
  ☆17Updated 3 years ago
• hakyimlab / gtex-gwas-analysis
  ☆24Updated 4 years ago
• elolab / multisubjectDSanalysis
  ☆17Updated 3 years ago
• FinucaneLab / pops
  ☆89Updated 6 months ago
• Marijn-Schipper / FLAMES
  FLAMES: Accurate gene prioritization in GWAS loci
  ☆57Updated last month
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆31Updated last week
• LieberInstitute / brainseq_phase2
  BrainSeq Phase II project lead by LIBD for the BrainSeq Consortium
  ☆11Updated 2 years ago
• dcalderon / rolypoly
  Method for identifying trait-relevant gene annotations from GWAS summary statistics.
  ☆18Updated 3 years ago
• perslab / CELLEX
  CELLEX (CELL-type EXpression-specificity)
  ☆43Updated 2 years ago
• Sun-lab / scRNAseq_pipelines
  pipelines to process scRNA-seq data
  ☆12Updated 5 years ago
• NathanSkene / EWCE
  Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
  ☆60Updated 3 months ago
• karthikj89 / scgenetics
  identifying disease critical cell types and programs from single cell RNAseq
  ☆58Updated 3 years ago
• MalteThodberg / awesome-multitrait-gwas
  List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS
  ☆31Updated 2 months ago