Alternatives and similar repositories for HowtoBook:

Users that are interested in HowtoBook are comparing it to the libraries listed below

• zhongw2 / GeneTEFlow
  ☆23Updated 3 years ago
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆39Updated last year
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 6 years ago
• mdozmorov / RNA-seq
  RNA-seq analysis scripts
  ☆15Updated 3 years ago
• d3b-center / annoFuse
  Filter and prioritize fusion calls
  ☆20Updated 6 months ago
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated 2 years ago
• imbforge / NGSpipe2go
  a set of NGS pipelines
  ☆24Updated last week
• thelovelab / rnaseqDTU
  RNA-seq workflow: differential transcript usage
  ☆21Updated last year
• naumenko-sa / bioscripts
  a bucket of bioinformatics scripts
  ☆13Updated 5 months ago
• biosinodx / SCcaller
  Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data
  ☆34Updated 4 months ago
• quevedor2 / aneuploidy_score
  R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…
  ☆16Updated 4 years ago
• ndbrown6 / MSK-GRAIL-TECHVAL
  High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants
  ☆22Updated 5 years ago
• ParkerLab / atactk
  A toolkit for working with ATAC-seq data.
  ☆24Updated 10 months ago
• nghiavtr / FuSeq_WES
  ☆11Updated last year
• mortazavilab / cerberus
  ☆19Updated 8 months ago
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 7 years ago
• ChrisMaherLab / ClonEvol
  ☆13Updated 7 years ago
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆23Updated last year
• smlmbrt / SimilarityRegression
  Predicting TF sequence-specificity similarity with weighted alignments
  ☆13Updated 5 years ago
• Xinglab / lr2rmats
  Long read to rMATS
  ☆31Updated last year
• Phillip-a-richmond / AnnotateVariants
  This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …
  ☆17Updated 2 years ago
• FJD-CEPH / aCNViewer
  Comprehensive genome-wide visualization of absolute copy number and copy neutral variations
  ☆29Updated 6 years ago
• SziKayLeung / Whole_Transcriptome_Paper
  ☆18Updated 11 months ago
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆24Updated 2 years ago
• epigen / open_pipelines
  Pipelines for NGS data preprocessing by the Bock lab and friends
  ☆21Updated 2 years ago
• nriddiford / cnvPlotteR
  Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec
  ☆13Updated 4 years ago
• shbrief / CNVWorkflow_Code
  CNV analysis workflow code for the manuscript
  ☆13Updated 4 years ago
• cortes-ciriano-lab / ReConPlot
  ☆21Updated 3 months ago
• gersteinlab / FunSeq2
  A flexible framework to annotate and prioritize cancer somatic mutations.
  ☆8Updated 7 years ago
• jsh58 / DMRfinder
  Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data
  ☆27Updated last year