Alternatives and similar repositories for HowtoBook

Users that are interested in HowtoBook are comparing it to the libraries listed below

• mdozmorov / RNA-seq
  RNA-seq analysis scripts
  ☆15Updated last month
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 8 years ago
• Phillip-a-richmond / AnnotateVariants
  This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …
  ☆18Updated 2 years ago
• iaaaka / evo-devo
  ☆12Updated 4 years ago
• naumenko-sa / bioscripts
  a bucket of bioinformatics scripts
  ☆13Updated this week
• imbforge / NGSpipe2go
  a set of NGS pipelines
  ☆24Updated last week
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆27Updated 2 years ago
• epigen / open_pipelines
  Pipelines for NGS data preprocessing by the Bock lab and friends
  ☆22Updated 3 years ago
• swvanderlaan / GWASToolKit
  A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.
  ☆18Updated last year
• mortazavilab / cerberus
  ☆18Updated last year
• lulab / shared_scripts
  shared scripts in Lu Lab @ Tsinghua University
  ☆14Updated 7 years ago
• hall-lab / gtex
  GTEx analysis scripts
  ☆20Updated 8 years ago
• NYU-BFX / lncRNA-screen
  lncRNA-screen
  ☆25Updated 8 years ago
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆25Updated 3 years ago
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated 2 years ago
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• jinghuazhao / TWAS-pipeline
  TWAS-pipeline
  ☆24Updated 4 years ago
• Baldridge37 / RNAseq_with_Hisat2_stringtie
  RNAseq analysis with Hisat2, stringtie, and ballgown
  ☆17Updated 6 years ago
• Xinglab / Myc-regulated_AS_PrCa_paper
  Scripts for plotting figures and running analysis throughout the manuscript
  ☆11Updated 4 years ago
• SziKayLeung / Whole_Transcriptome_Paper
  ☆18Updated last year
• LewisLabUCSD / NGS-Pipeline
  All kinds of NGS analysis pipeline
  ☆12Updated 6 years ago
• TRON-Bioinformatics / tronflow-alignment
  Nextflow pipeline for BWA, BWA2 and STAR alignments
  ☆12Updated last year
• gagneurlab / splicemap
  ☆23Updated 4 months ago
• FinucaneLab / fine-mapping-inf
  Fine-mapping with infinitesimal effects
  ☆20Updated 6 months ago
• Nealelab / whole_genome_analysis_pipeline
  ☆20Updated 2 years ago
• shijianasdf / UsualRcode
  bioinformatics R test code
  ☆14Updated 3 months ago
• bernatgel / regioneR
  An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests
  ☆13Updated 6 months ago
• YeoLab / gscripts
  General Use Scripts and Helper functions
  ☆16Updated 7 years ago
• joed3 / GTExV6PRareVariation
  Repository to reproduce analyses from the GTEx V6P Rare Variation Manuscript
  ☆17Updated 8 years ago
• umccr / vcf_stuff
  📊Evaluating, filtering, comparing, and visualising VCF
  ☆28Updated 2 years ago