Alternatives and similar repositories for HowtoBook

Users that are interested in HowtoBook are comparing it to the libraries listed below

• Phillip-a-richmond / AnnotateVariants
  This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …
  ☆18Updated 2 years ago
• mdozmorov / RNA-seq
  RNA-seq analysis scripts
  ☆16Updated last month
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 8 years ago
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆27Updated 2 years ago
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• imbforge / NGSpipe2go
  a set of NGS pipelines
  ☆24Updated this week
• naumenko-sa / bioscripts
  a bucket of bioinformatics scripts
  ☆13Updated this week
• epigen / open_pipelines
  Pipelines for NGS data preprocessing by the Bock lab and friends
  ☆22Updated 3 years ago
• iaaaka / evo-devo
  ☆12Updated 4 years ago
• gagneurlab / splicemap
  ☆23Updated 6 months ago
• swvanderlaan / GWASToolKit
  A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.
  ☆18Updated 3 weeks ago
• mortazavilab / cerberus
  ☆20Updated last week
• battle-lab / twn_tsn
  Transcriptome-wide network
  ☆16Updated 6 years ago
• SziKayLeung / Whole_Transcriptome_Paper
  ☆18Updated last year
• NYU-BFX / lncRNA-screen
  lncRNA-screen
  ☆25Updated 8 years ago
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated 3 years ago
• hall-lab / gtex
  GTEx analysis scripts
  ☆20Updated 8 years ago
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆37Updated last year
• Baldridge37 / RNAseq_with_Hisat2_stringtie
  RNAseq analysis with Hisat2, stringtie, and ballgown
  ☆17Updated 6 years ago
• thelovelab / rnaseqDTU
  RNA-seq workflow: differential transcript usage
  ☆23Updated 2 years ago
• flemingtonlab / SpliceTools
  ☆17Updated last year
• IrinaVKuznetsova / CirGO
  ☆21Updated last year
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆30Updated last week
• nriddiford / cnvPlotteR
  Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec
  ☆13Updated 5 years ago
• LewisLabUCSD / NGS-Pipeline
  All kinds of NGS analysis pipeline
  ☆12Updated 6 years ago
• biosinodx / SCcaller
  Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data
  ☆35Updated last year
• Xinglab / lr2rmats
  Long read to rMATS
  ☆32Updated 2 years ago
• bernatgel / regioneR
  An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests
  ☆13Updated 8 months ago
• markrobinsonuzh / diff_splice_paper
  Code for differential splicing comparison paper (Soneson, Matthes, et al.)
  ☆20Updated 9 years ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 10 months ago