Alternatives and similar repositories for HowtoBook

Users that are interested in HowtoBook are comparing it to the libraries listed below

• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 7 years ago
• mdozmorov / RNA-seq
  RNA-seq analysis scripts
  ☆15Updated 3 weeks ago
• Phillip-a-richmond / AnnotateVariants
  This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …
  ☆17Updated 2 years ago
• naumenko-sa / bioscripts
  a bucket of bioinformatics scripts
  ☆13Updated 2 weeks ago
• imbforge / NGSpipe2go
  a set of NGS pipelines
  ☆24Updated last week
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆27Updated 2 years ago
• epigen / open_pipelines
  Pipelines for NGS data preprocessing by the Bock lab and friends
  ☆21Updated 2 years ago
• iaaaka / evo-devo
  ☆12Updated 4 years ago
• TRON-Bioinformatics / tronflow-alignment
  Nextflow pipeline for BWA, BWA2 and STAR alignments
  ☆12Updated last year
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• swvanderlaan / GWASToolKit
  A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.
  ☆18Updated 9 months ago
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆30Updated 2 years ago
• gagneurlab / splicemap
  ☆21Updated last week
• NYU-BFX / lncRNA-screen
  lncRNA-screen
  ☆25Updated 8 years ago
• lulab / shared_scripts
  shared scripts in Lu Lab @ Tsinghua University
  ☆13Updated 6 years ago
• Baldridge37 / RNAseq_with_Hisat2_stringtie
  RNAseq analysis with Hisat2, stringtie, and ballgown
  ☆16Updated 5 years ago
• jinghuazhao / TWAS-pipeline
  TWAS-pipeline
  ☆22Updated 4 years ago
• nghiavtr / FuSeq_WES
  ☆11Updated 2 years ago
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆24Updated 2 years ago
• hall-lab / gtex
  GTEx analysis scripts
  ☆20Updated 8 years ago
• etal / cnvkit-examples
  Example datasets for CNVkit (http://github.com/etal/cnvkit)
  ☆23Updated 6 years ago
• LewisLabUCSD / NGS-Pipeline
  All kinds of NGS analysis pipeline
  ☆12Updated 5 years ago
• mortazavilab / cerberus
  ☆19Updated last year
• ipdgc / Manhattan-Plotter
  This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3
  ☆13Updated 6 years ago
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 6 years ago
• roland-rad-lab / MoCaSeq
  Analysis pipelines for cancer genome sequencing in mice.
  ☆21Updated last year
• SziKayLeung / Whole_Transcriptome_Paper
  ☆18Updated last year
• shijianasdf / UsualRcode
  bioinformatics R test code
  ☆14Updated last month
• YeoLab / gscripts
  General Use Scripts and Helper functions
  ☆16Updated 7 years ago
• bernatgel / regioneR
  An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests
  ☆13Updated 2 months ago