Alternatives and similar repositories for snpArcher:

Users that are interested in snpArcher are comparing it to the libraries listed below

• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆102Updated last year
• moiexpositoalonsolab / grenepipe
  A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…
  ☆96Updated 3 weeks ago
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆47Updated 3 weeks ago
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆115Updated 9 months ago
• daewoooo / SVbyEye
  ☆87Updated last month
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆72Updated 3 years ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆41Updated 6 years ago
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆45Updated 7 months ago
• rhysf / Synima
  Synteny Imager
  ☆61Updated 7 months ago
• hillerlab / make_lastz_chains
  Portable solution to generate genome alignment chains using lastz
  ☆55Updated last week
• marschall-lab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆100Updated last month
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 5 months ago
• simonhmartin / tutorials
  Tutorials on evolutionary genomics
  ☆43Updated 3 years ago
• guyleonard / genomics_adventure
  Workshop on Genomics - Genomics Adventure
  ☆40Updated 3 months ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆85Updated 3 years ago
• stevemussmann / admixturePipeline
  A pipeline that accepts a VCF file to run through Admixture
  ☆60Updated 3 months ago
• jamiemcg / BUSCO_phylogenomics
  BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
  ☆65Updated 6 months ago
• PacificBiosciences / pbtk
  PacBio BAM toolkit
  ☆43Updated last month
• DessimozLab / OMArk
  ☆71Updated last month
• clemgoub / TE-Aid
  Annotation helper tool for the manual curation of transposable element consensus sequences
  ☆48Updated last month
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆111Updated this week
• c-zhou / oatk
  A organelle de novo genome assembly toolkit
  ☆59Updated 2 months ago
• kiranbandi / synvisio
  SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …
  ☆84Updated last year
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆80Updated 3 years ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆78Updated 8 months ago
• Plant-Food-Research-Open / assemblyqc
  A Nextflow pipeline for evaluating assembly quality
  ☆33Updated 3 weeks ago
• abacus-gene / paml-tutorial
  paml documentation and tutorials
  ☆55Updated last month
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆55Updated 2 years ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆100Updated 3 months ago
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆27Updated 6 years ago