hammerlab / cytokit
Microscopy Image Cytometry Toolkit
☆116Updated 2 years ago
Alternatives and similar repositories for cytokit:
Users that are interested in cytokit are comparing it to the libraries listed below
- Community-contributed and experimental CellProfiler modules.☆64Updated last week
- Tools and scripts for EASI-FISH image data analysis☆17Updated 2 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆62Updated last year
- ☆40Updated 5 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- Toolbox for the analysis of smFISH images.☆59Updated last year
- Multiple-choice microscopy pipeline☆131Updated 2 months ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆97Updated 2 years ago
- Open-source software for exploring and analyzing large, high-dimensional image-derived data.☆153Updated 8 months ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆20Updated 3 months ago
- Methods for Image-Based Cell Profiling☆51Updated last year
- A python developed graphical user interface for tracking cell nuclei☆9Updated 7 years ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆134Updated 5 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 7 months ago
- Image classification for imaging flow cytometry.☆27Updated 4 months ago
- Cell tracker designed for tracking intestinal organoids☆21Updated last week
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆157Updated this week
- Find profile pairs and compute metrics between them.☆12Updated last month
- EASI-FISH analysis pipeline for spatial transcriptomics☆34Updated 5 months ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆53Updated 4 years ago
- Python nd2 reader based on the ND2 SDK☆17Updated 3 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 3 months ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆49Updated 3 months ago
- Histology Topography Cytometry Analysis Toolbox☆67Updated last year
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated this week
- ☆71Updated last month
- Track and lineage visualization with btrack and Napari☆45Updated 6 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 11 months ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆213Updated 3 months ago