Microscopy Image Cytometry Toolkit
☆115Jul 15, 2022Updated 3 years ago
Alternatives and similar repositories for cytokit
Users that are interested in cytokit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multiple-choice microscopy pipeline☆149Feb 27, 2026Updated last month
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆35Apr 4, 2025Updated last year
- CODEX data processing code☆12Jul 1, 2025Updated 9 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Jun 25, 2025Updated 9 months ago
- Histology Topography Cytometry Analysis Toolbox☆69Mar 23, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Sep 2, 2024Updated last year
- Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise☆13Jun 14, 2022Updated 3 years ago
- A performant scientific image visualization system.☆36Mar 20, 2026Updated 3 weeks ago
- multimodal whole slide image registration in a graph structure☆102Jul 4, 2024Updated last year
- ImJoy Plugin Engine for running Python plugins locally or remotely from ImJoy.io☆18Aug 16, 2022Updated 3 years ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆221Dec 1, 2025Updated 4 months ago
- Python API and Jupyter widget for Vitessce☆65Apr 4, 2026Updated last week
- Image restoration for fluorescence microscopy☆330Dec 8, 2025Updated 4 months ago
- Lattice light-sheet post-processing utility.☆30Apr 6, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Python library for easily calculating image-quality related features from images☆22Jul 6, 2023Updated 2 years ago
- Easily read and write ome-tiff images in python☆28May 6, 2024Updated last year
- ☆71Jan 18, 2023Updated 3 years ago
- starfish: unified pipelines for image-based transcriptomics☆246Updated this week
- An introduction to deepcell and deep learning☆156Oct 21, 2024Updated last year
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆67Mar 12, 2025Updated last year
- Piecewise alignment for layers of mosaics☆48Feb 18, 2026Updated last month
- Integrated Cell project implemented in pytorch☆44Oct 15, 2025Updated 5 months ago
- scalable multiscale image pyramids in python☆29Jul 25, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An Ilastik-like interactive pixel classifier.☆16Sep 5, 2024Updated last year
- RAnking Markers for CEll Segmentation☆12Feb 22, 2022Updated 4 years ago
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 4 years ago
- A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images☆93Mar 5, 2024Updated 2 years ago
- ☆40Mar 11, 2020Updated 6 years ago
- Image Mass Cytometry analysis pipeline☆26Jun 3, 2025Updated 10 months ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆84Aug 5, 2025Updated 8 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆61Jul 18, 2025Updated 8 months ago
- Running ImJoy plugins in Jupyter notebooks☆11Jan 10, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆95Mar 12, 2026Updated last month
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆26Jul 3, 2020Updated 5 years ago
- Spatial Single-Cell Analysis Toolkit☆110Mar 11, 2026Updated last month
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Jan 6, 2023Updated 3 years ago
- Imaris file format reader☆15Aug 20, 2025Updated 7 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated this week
- TensorFlow Deconvolution for Microscopy Data☆91Apr 29, 2022Updated 3 years ago