hammerlab / cytokitLinks
Microscopy Image Cytometry Toolkit
☆114Updated 3 years ago
Alternatives and similar repositories for cytokit
Users that are interested in cytokit are comparing it to the libraries listed below
Sorting:
- Community-contributed and experimental CellProfiler modules.☆72Updated 3 weeks ago
- AICS Segmentation (One-Way) Mirror☆45Updated 5 years ago
- This code contains the neural network implementation from the nature communication manuscript NCOMMS-16-25447A.☆33Updated 8 years ago
- AICS ML Segmentation (One-Way) Mirror☆27Updated 4 years ago
- Representation Learning for detection of phenotype-associated cell subsets☆66Updated 5 years ago
- CytoData 2016 – origin story☆18Updated 8 years ago
- Morphological profiling using deep learning☆123Updated last year
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 4 months ago
- Methods for Image-Based Cell Profiling☆51Updated last year
- Integrated Cell project implemented in pytorch☆44Updated 3 months ago
- Open-source software for exploring and analyzing large, high-dimensional image-derived data.☆166Updated 6 months ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Updated 5 years ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆99Updated 2 years ago
- Predicting Cell Health with Morphological Profiles☆39Updated 4 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Updated 7 months ago
- A web application for classifying objects☆29Updated 4 years ago
- Multiple-choice microscopy pipeline☆145Updated 2 weeks ago
- Find profile pairs and compute retrieval metrics between them.☆21Updated 2 weeks ago
- Toolbox for the analysis of smFISH images.☆73Updated 2 years ago
- a python module to download Broad Bioimage Benchmark Collection images☆24Updated 6 years ago
- A Python library for reading and writing Flow Cytometry Standard (FCS) files☆55Updated 3 months ago
- Histology Topography Cytometry Analysis Toolbox☆69Updated 3 months ago
- Image classification for imaging flow cytometry.