hammerlab / cytokitLinks
Microscopy Image Cytometry Toolkit
☆114Updated 3 years ago
Alternatives and similar repositories for cytokit
Users that are interested in cytokit are comparing it to the libraries listed below
Sorting:
- Community-contributed and experimental CellProfiler modules.☆71Updated 3 weeks ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- This code contains the neural network implementation from the nature communication manuscript NCOMMS-16-25447A.☆33Updated 7 years ago
- Representation Learning for detection of phenotype-associated cell subsets☆66Updated 5 years ago
- Predicting Cell Health with Morphological Profiles☆39Updated 3 years ago
- Methods for Image-Based Cell Profiling☆51Updated last year
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Updated 5 years ago
- CytoData 2016 – origin story☆18Updated 8 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 2 months ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Updated 5 months ago
- a python module to download Broad Bioimage Benchmark Collection images☆24Updated 6 years ago
- Integrated Cell project implemented in pytorch☆44Updated last month
- Morphological profiling using deep learning☆124Updated last year
- Image classification for imaging flow cytometry.☆28Updated 11 months ago
- AICS ML Segmentation (One-Way) Mirror☆27Updated 4 years ago
- Find profile pairs and compute retrieval metrics between them.☆21Updated this week
- Multiple-choice microscopy pipeline☆143Updated 3 weeks ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆79Updated 4 months ago
- CellProfiler tutorial pipelines and images☆98Updated last month
- An interactive tool for segmenting yeast cells using deep learning.☆28Updated last week
- Histology Topography Cytometry Analysis Toolbox☆69Updated last month
- 3D virtual staining with 2D and 2.5D U-Nets☆31Updated 2 years ago
- Open-source software for exploring and analyzing large, high-dimensional image-derived data.☆167Updated 4 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- Python API and Jupyter widget for Vitessce☆59Updated 3 weeks ago
- Cell tracking using TensorFlow and BayesianTracker☆22Updated 3 years ago
- Mitochondria Analyzer☆22Updated 2 years ago
- Toolbox for the analysis of smFISH images.☆70Updated 2 years ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Updated 4 years ago