apeer-micro / apeer-ometiff-libraryLinks
Easily read and write ome-tiff images in python
☆28Updated last year
Alternatives and similar repositories for apeer-ometiff-library
Users that are interested in apeer-ometiff-library are comparing it to the libraries listed below
Sorting:
- ☆23Updated 4 years ago
- Python module for registering and fusing multi-view microscopy data☆24Updated 9 months ago
- native Python dataclasses for the OME data model☆65Updated 2 weeks ago
- Track and lineage visualization with btrack and Napari☆45Updated 3 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 5 months ago
- Gamified image segmentation quality estimation☆19Updated 8 months ago
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 4 years ago
- High quality visualization for volumetric image data☆54Updated 2 weeks ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated 2 months ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Updated 2 months ago
- StarDist plugin for napari☆38Updated last year
- ☆41Updated 2 weeks ago
- Command-line client for Fractal☆47Updated this week
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 4 years ago
- MultiModal Big Image Data Sharing and Exploration☆18Updated 2 years ago
- Resources for teaching/preparing to teach bioimage analysis☆58Updated last month
- A napari plugin for clustering objects according to their properties.☆88Updated last week
- ☆22Updated 2 years ago
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆35Updated 8 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆25Updated 9 months ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆54Updated last month
- Tool for segmentation in bioimaging☆35Updated last week
- A multi-dimensional spatial image data structure for scientific Python.☆43Updated 4 months ago
- Python image segmentation plugin☆31Updated 4 years ago
- Raw format to OME-TIFF converter☆56Updated last month
- AICS Segmentation (One-Way) Mirror☆45Updated 5 years ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated 3 weeks ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆35Updated last month
- Visualizing feature measurements on label images in napari☆10Updated last year
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Updated 3 weeks ago