apeer-micro / apeer-ometiff-libraryLinks
Easily read and write ome-tiff images in python
☆28Updated last year
Alternatives and similar repositories for apeer-ometiff-library
Users that are interested in apeer-ometiff-library are comparing it to the libraries listed below
Sorting:
- ☆23Updated 4 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆58Updated 4 months ago
- Python module for registering and fusing multi-view microscopy data☆23Updated 8 months ago
- High quality visualization for volumetric image data☆52Updated this week
- Optimize image processing workflows in napari☆17Updated 6 months ago
- ☆22Updated 2 years ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated 3 weeks ago
- Python image segmentation plugin☆31Updated 4 years ago
- Gamified image segmentation quality estimation☆18Updated 6 months ago
- native Python dataclasses for the OME data model☆64Updated 2 weeks ago
- Command-line client for Fractal☆47Updated this week
- Track and lineage visualization with btrack and Napari☆46Updated last month
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Updated last year
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Updated last month
- Resources for teaching/preparing to teach bioimage analysis☆58Updated last week
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆35Updated 7 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 8 months ago
- StarDist plugin for napari☆39Updated last year
- MultiModal Big Image Data Sharing and Exploration☆17Updated 2 years ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 4 years ago
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 4 years ago
- A multi-dimensional spatial image data structure for scientific Python.☆43Updated 3 months ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆20Updated last month
- ☆39Updated this week
- Process images using SimpleITK in napari☆22Updated 6 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆11Updated 2 years ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45Updated 6 months ago
- ☆49Updated last week
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆32Updated last month