Alternatives and similar repositories for campa

Users that are interested in campa are comparing it to the libraries listed below

• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆27Updated 7 months ago
• Nanostring-Biostats / SpatialOmicsOverlay
  Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).
  ☆20Updated 2 weeks ago
• almaan / eggplant
  ☆21Updated 2 years ago
• sggao / celllens
  CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data
  ☆20Updated last week
• BiomedicalMachineLearning / Spacell
  ☆25Updated 5 years ago
• joshwillmoore1 / MuSpAn-Public
  A public MuSpAn page for community discussions and issue reporting.
  ☆11Updated last month
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆37Updated 6 months ago
• ElementoLab / utag
  ☆35Updated last year
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆14Updated 5 months ago
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆47Updated last week
• ratschlab / scim
  Code for Universal Single-Cell Matching with Unpaired Feature Sets
  ☆21Updated 3 years ago
• wanglab-broad / CAST
  CAST package
  ☆38Updated 7 months ago
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆23Updated 10 months ago
• MICS-Lab / scyan
  Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…
  ☆35Updated 6 months ago
• BiomedicalMachineLearning / stlearn_interactive
  Interactive applications of stlearn
  ☆15Updated 2 years ago
• KenLauLab / DR-structure-preservation
  A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques
  ☆16Updated 4 years ago
• feiyoung / PRECAST
  an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…
  ☆10Updated last year
• dpeerlab / ENVI
  ☆48Updated last week
• Mr-Milk / SpatialTis
  Spatial analysis toolkit for single cell multiplexed tissue data
  ☆30Updated 9 months ago
• AllonKleinLab / cospar
  ☆26Updated last year
• jian-shu-lab / Bering
  ☆16Updated last month
• ZhuangLab / MERlin
  MERFISH decoding software
  ☆26Updated last year
• FridleyLab / spatialGE
  Methods for visualization and analysis of spatially-resolved gene expression
  ☆19Updated last week
• BodenmillerGroup / SCPathology_publication
  The Single-Cell Pathology Landscape of Breast Cancer
  ☆26Updated 5 years ago
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆79Updated 2 months ago
• AI4SCR / ATHENA
  ☆33Updated 4 months ago
• pachterlab / concordex
  Identification of spatial homogeneous regions
  ☆21Updated 4 months ago
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆29Updated 6 months ago
• saeyslab / napari-sparrow
  https://sparrow-pipeline.readthedocs.io/en/latest/
  ☆27Updated this week
• klarman-cell-observatory / sc_eVIP
  Variant impact phenotyping using Perturb-seq
  ☆9Updated last year