Alternatives and similar repositories for campa

Users that are interested in campa are comparing it to the libraries listed below

• feiyoung / PRECAST
  an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…
  ☆12Updated 2 months ago
• ElementoLab / utag
  ☆39Updated last year
• BiomedicalMachineLearning / Spacell
  ☆27Updated 6 years ago
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆30Updated last year
• stevexniu / spots
  Statistical analysis for spatial omics data
  ☆11Updated 3 years ago
• suinleelab / contrastiveVI
  ☆58Updated last year
• BodenmillerGroup / SCPathology_publication
  The Single-Cell Pathology Landscape of Breast Cancer
  ☆27Updated 5 years ago
• BiomedicalMachineLearning / stlearn_interactive
  Interactive applications of stlearn
  ☆15Updated 2 years ago
• dpeerlab / ENVI
  ☆50Updated last month
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆34Updated 8 months ago
• MICS-Lab / scyan
  Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…
  ☆39Updated last year
• potulabe / symphonypy
  Port of symphony algorithm of single-cell reference atlas mapping to Python
  ☆33Updated 2 months ago
• wanglab-broad / CAST
  CAST package
  ☆41Updated last year
• CostaLab / MOJITOO
  MOJITOO: a fast and universal method for integration of multimodal single cell data
  ☆11Updated last year
• haotianteng / FICT
  FISH Iterative Cell Typing
  ☆11Updated last year
• joshwillmoore1 / MuSpAn-Public
  A public MuSpAn page for community discussions and issue reporting.
  ☆17Updated last month
• FridleyLab / spatialGE
  Methods for visualization and analysis of spatially-resolved gene expression
  ☆21Updated 3 months ago
• walsh-quail-labs / IMC-Lung
  ☆20Updated 2 years ago
• gerstung-lab / BaSISS
  Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper
  ☆27Updated 3 years ago
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆61Updated this week
• HiDiHlabs / SpatialLeiden
  Implementation of multiplex Leiden for analysis of spatial omics data
  ☆14Updated last week
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆56Updated 5 months ago
• AI4SCR / ATHENA
  ☆36Updated last month
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆25Updated last year
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆44Updated 2 years ago
• KrishnaswamyLab / Gene-Signal-Pattern-Analysis
  Learning meaningful representations of genes
  ☆19Updated 5 months ago
• tabdelaal / SIRV
  Spatial RNA velocity
  ☆10Updated last year
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆31Updated 4 months ago
• STOmics / CellBin
  Tools for generating single-cell gene expression data
  ☆34Updated 5 months ago
• Genentech / pascient
  ☆17Updated 7 months ago