Alternatives and similar repositories for campa:

Users that are interested in campa are comparing it to the libraries listed below

• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆26Updated 6 months ago
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆38Updated this week
• dpeerlab / ENVI
  ☆46Updated 2 weeks ago
• wanglab-broad / CAST
  CAST package
  ☆33Updated 5 months ago
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆14Updated 3 months ago
• BiomedicalMachineLearning / Spacell
  ☆25Updated 5 years ago
• AllonKleinLab / cospar
  ☆26Updated last year
• ElementoLab / utag
  ☆34Updated last year
• sggao / celllens
  CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data
  ☆14Updated last month
• almaan / eggplant
  ☆21Updated 2 years ago
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆21Updated 8 months ago
• BodenmillerGroup / SCPathology_publication
  The Single-Cell Pathology Landscape of Breast Cancer
  ☆26Updated 5 years ago
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆35Updated 4 months ago
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆53Updated 2 weeks ago
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆23Updated last year
• Nanostring-Biostats / SpatialOmicsOverlay
  Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).
  ☆18Updated 3 months ago
• feiyoung / PRECAST
  an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…
  ☆10Updated last year
• ding-lab / mushroom
  A computational tool for identification of 3D multi-modal spatial neighborhoods
  ☆11Updated 2 months ago
• ratschlab / scim
  Code for Universal Single-Cell Matching with Unpaired Feature Sets
  ☆21Updated 3 years ago
• KrishnaswamyLab / Gene-Signal-Pattern-Analysis
  Learning meaningful representations of genes
  ☆17Updated 5 months ago
• AI4SCR / ATHENA
  ☆31Updated 3 months ago
• BiomedicalMachineLearning / stlearn_interactive
  Interactive applications of stlearn
  ☆16Updated last year
• ZhuangLab / MERlin
  MERFISH decoding software
  ☆26Updated last year
• sagar87 / spatialproteomics
  Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…
  ☆17Updated this week
• gerstung-lab / BaSISS
  Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper
  ☆25Updated 2 years ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆34Updated 2 months ago
• hubmapconsortium / spatial-transcriptomics-pipeline
  ☆30Updated 11 months ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆26Updated 3 months ago
• mvinyard / torch-adata
  Create PyTorch Datasets from AnnData
  ☆20Updated last month
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆17Updated last year