Alternatives and similar repositories for campa:

Users that are interested in campa are comparing it to the libraries listed below

• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆25Updated 5 months ago
• ElementoLab / utag
  ☆34Updated 11 months ago
• mvinyard / torch-adata
  Create PyTorch Datasets from AnnData
  ☆20Updated last week
• dpeerlab / ENVI
  ☆45Updated 4 months ago
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆34Updated last week
• wanglab-broad / CAST
  CAST package
  ☆31Updated 4 months ago
• BiomedicalMachineLearning / Spacell
  ☆25Updated 5 years ago
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆14Updated 2 months ago
• Nanostring-Biostats / SpatialOmicsOverlay
  Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).
  ☆18Updated 2 months ago
• klarman-cell-observatory / sc_eVIP
  Variant impact phenotyping using Perturb-seq
  ☆9Updated 10 months ago
• AllonKleinLab / cospar
  ☆26Updated last year
• BiomedicalMachineLearning / stlearn_interactive
  Interactive applications of stlearn
  ☆16Updated last year
• pachterlab / concordex
  Identification of spatial homogeneous regions
  ☆20Updated 2 months ago
• ratschlab / scim
  Code for Universal Single-Cell Matching with Unpaired Feature Sets
  ☆21Updated 3 years ago
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆33Updated 3 months ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆33Updated last month
• almaan / eggplant
  ☆21Updated 2 years ago
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆57Updated last year
• sggao / celllens
  CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data
  ☆14Updated 3 weeks ago
• scverse / spatialdata-notebooks
  ☆46Updated this week
• nitzanlab / scPrisma
  scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…
  ☆17Updated 11 months ago
• scverse / spatialdata-io
  ☆51Updated last week
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆19Updated 7 months ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆52Updated 9 months ago
• BodenmillerGroup / SCPathology_publication
  The Single-Cell Pathology Landscape of Breast Cancer
  ☆25Updated 5 years ago
• gerstung-lab / BaSISS
  Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper
  ☆24Updated 2 years ago
• theislab / graphcompass
  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
  ☆35Updated 2 months ago
• KenLauLab / DR-structure-preservation
  A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques
  ☆15Updated 3 years ago
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆76Updated 2 weeks ago