Alternatives and similar repositories for pytorch_integrated_cell

Users that are interested in pytorch_integrated_cell are comparing it to the libraries listed below

• AllenCellModeling / torch_integrated_cell
  ☆46Updated 2 months ago
• hammerlab / cytokit
  Microscopy Image Cytometry Toolkit
  ☆114Updated 3 years ago
• theislab / deepflow
  This code contains the neural network implementation from the nature communication manuscript NCOMMS-16-25447A.
  ☆33Updated 7 years ago
• CellProfiler / CellProfiler-plugins
  Community-contributed and experimental CellProfiler modules.
  ☆72Updated this week
• spreka / biomagdsb
  This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…
  ☆55Updated 5 years ago
• psteinb / b3get
  a python module to download Broad Bioimage Benchmark Collection images
  ☆24Updated 6 years ago
• okraus / DeepLoc
  This repository contains the code, and access to the pretrained models and datasets for the paper: "Automated analysis of high-content mi…
  ☆50Updated 8 years ago
• AllenInstitute / aics-ml-segmentation
  AICS ML Segmentation (One-Way) Mirror
  ☆27Updated 4 years ago
• carpenterlab / 2019_caicedo_dsb
  Analysis of results of the Data Science Bowl 2018
  ☆22Updated 5 years ago
• cytomining / DeepProfiler
  Morphological profiling using deep learning
  ☆124Updated last year
• broadinstitute / cell-health
  Predicting Cell Health with Morphological Profiles
  ☆39Updated 3 years ago
• AllenCellModeling / pytorch_fnet
  Three dimensional cross-modal image inference
  ☆161Updated 2 months ago
• piximi / piximi_old
  a free, open-source web app for annotating, training, and evaluating image understanding algorithms
  ☆25Updated 4 years ago
• lewlin / a-large-image-tiler
  (Python3, PyQt5) GUI software to tile large images. Designed to image 96-well plates used in wet labs.
  ☆12Updated 7 years ago
• carpenterlab / unet4nuclei
  U-net based segmentation of nuclei in microscopy images
  ☆52Updated 7 years ago
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 5 years ago
• AllenCellModeling / czifile
  czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html
  ☆15Updated 2 months ago
• piximi / application_archived
  A web application for classifying objects
  ☆29Updated 4 years ago
• biocompibens / SME
  Smooth 2D manifold extraction from 3D image stack
  ☆21Updated 7 years ago
• cytomining / cytominer
  Methods for Image-Based Cell Profiling
  ☆51Updated last year
• marrlab / HematoFatePrediction
  Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4…
  ☆20Updated this week
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆79Updated 4 months ago
• CellProfiler / notebooks
  Jupyter notebooks for CellProfiler and friends
  ☆14Updated 7 years ago
• CovertLab / DeepCell
  ☆51Updated 7 years ago
• trasse / OpSeF-IV
  ☆24Updated 5 years ago
• mehta-lab / microDL
  3D virtual staining with 2D and 2.5D U-Nets
  ☆31Updated 2 years ago
• jmschrei / rambutan
  Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.
  ☆21Updated 7 years ago
• broadinstitute / deepometry
  Image classification for imaging flow cytometry.
  ☆28Updated 11 months ago
• carpenterlab / 2016_Bray_NatureProtocols
  Supporting data files, documentation, and updated tips for the Cell Painting protocol
  ☆22Updated 4 years ago
• CellProfiling / subcell-embed
  Codebase for training the SubCell models
  ☆17Updated last week