AllenCellModeling / pytorch_integrated_cellLinks
Integrated Cell project implemented in pytorch
☆44Updated last year
Alternatives and similar repositories for pytorch_integrated_cell
Users that are interested in pytorch_integrated_cell are comparing it to the libraries listed below
Sorting:
- ☆46Updated 6 years ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Updated 3 years ago
- Microscopy Image Cytometry Toolkit☆116Updated 2 years ago
- Three dimensional cross-modal image inference☆155Updated 4 years ago
- Community-contributed and experimental CellProfiler modules.☆65Updated 2 weeks ago
- U-net based segmentation of nuclei in microscopy images☆53Updated 6 years ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆54Updated 4 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- a python module to download Broad Bioimage Benchmark Collection images☆24Updated 6 years ago
- CytoData 2016 – origin story☆18Updated 7 years ago
- This code contains the neural network implementation from the nature communication manuscript NCOMMS-16-25447A.☆33Updated 7 years ago
- Morphological profiling using deep learning☆117Updated 7 months ago
- Source code from Bray et al., (2017) A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Pa…☆41Updated last year
- 3D virtual staining with 2D and 2.5D U-Nets☆29Updated last year
- A fast and cross-platform image analysis framework for fluorescence time-lapse microscopy and bioimage informatics.☆43Updated 11 months ago
- A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.☆60Updated 4 years ago
- (Python3, PyQt5) GUI software to tile large images. Designed to image 96-well plates used in wet labs.☆12Updated 6 years ago
- This repository contains the code, and access to the pretrained models and datasets for the paper: "Automated analysis of high-content mi…☆50Updated 8 years ago
- ☆40Updated 5 years ago
- Python package to export tensorflow models as DeepImageJ bundled models☆17Updated 2 years ago
- Methods for Image-Based Cell Profiling☆51Updated last year
- Open-source software for exploring and analyzing large, high-dimensional image-derived data.☆154Updated 9 months ago
- Jupyter notebooks for CellProfiler and friends☆13Updated 7 years ago
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆29Updated last month
- Analysis of results of the Data Science Bowl 2018☆21Updated 4 years ago
- Image classification for imaging flow cytometry.☆29Updated 5 months ago
- Algorithm for round cells identification in the brightfield microscopy images.☆21Updated last year
- Jupyter Notebooks for the Image Data Resource☆18Updated 2 years ago
- czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html☆15Updated 6 years ago
- DeepCell Kiosk Distribution for Kubernetes on GKE and AWS☆35Updated last year