AllenCellModeling / pytorch_integrated_cellLinks
Integrated Cell project implemented in pytorch
☆44Updated last year
Alternatives and similar repositories for pytorch_integrated_cell
Users that are interested in pytorch_integrated_cell are comparing it to the libraries listed below
Sorting:
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Updated 3 years ago
- ☆46Updated 6 years ago
- a python module to download Broad Bioimage Benchmark Collection images☆24Updated 6 years ago
- Legacy project superseded by https://github.com/morphonets/SNT☆12Updated 3 years ago
- This code contains the neural network implementation from the nature communication manuscript NCOMMS-16-25447A.☆33Updated 7 years ago
- CytoData 2016 – origin story☆18Updated 7 years ago
- Microscopy Image Cytometry Toolkit☆116Updated 2 years ago
- Source code from Bray et al., (2017) A dataset of images and morphological profiles of 30,000 small-molecule treatments using the Cell Pa…☆41Updated last year
- Morphological profiling using deep learning☆118Updated 8 months ago
- imaging demos☆9Updated 2 years ago
- Python nd2 reader based on the ND2 SDK☆17Updated 3 years ago
- Smooth 2D manifold extraction from 3D image stack☆21Updated 7 years ago
- ☆40Updated 5 years ago
- Image classification for imaging flow cytometry.☆29Updated 5 months ago
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆29Updated 2 months ago
- A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.☆60Updated 4 years ago
- Community-contributed and experimental CellProfiler modules.☆66Updated last week
- Core functionality of NanoJ☆16Updated last year
- AICS ML Segmentation (One-Way) Mirror☆27Updated 4 years ago
- Data stories☆10Updated 7 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Block-wise task scheduling for large nD volumes.☆30Updated 2 months ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆76Updated 9 months ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆54Updated 4 years ago
- An interactive tool for segmenting yeast cells using deep learning.☆28Updated last month
- A Deep Architecture for Synapse Detection in Multiplexed Fluorescence Images☆14Updated 6 years ago
- U-net based segmentation of nuclei in microscopy images☆53Updated 6 years ago
- CLIJ is deprecated. Visit CLIJ2☆56Updated 4 years ago
- Jupyter notebooks for CellProfiler and friends☆13Updated 7 years ago
- Notebooks for VoidSeg☆16Updated 5 years ago