transformify-plugins / segmentifyLinks
Python image segmentation plugin
☆31Updated 5 years ago
Alternatives and similar repositories for segmentify
Users that are interested in segmentify are comparing it to the libraries listed below
Sorting:
- Python module for registering and fusing multi-view microscopy data☆24Updated 10 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 4 months ago
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- Tools for distributed alignment of massive images☆92Updated this week
- ☆23Updated 4 years ago
- Cookiecutter for napari plugins☆71Updated last year
- python tools for BigDataViewer☆22Updated last year
- Easily read and write ome-tiff images in python☆28Updated last year
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45Updated 9 months ago
- ☆33Updated 9 months ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Updated 3 months ago
- StarDist plugin for napari☆38Updated last year
- Process images using SimpleITK in napari☆23Updated 9 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 6 months ago
- A napari plugin for clustering objects according to their properties.☆90Updated last week
- MultiModal Big Image Data Sharing and Exploration☆18Updated 3 years ago
- Specification for the bioimage.io model description file.☆22Updated this week
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 4 years ago
- Visualizing feature measurements on label images in napari☆10Updated last year
- GPU-accelerated Image Processing library for Python☆53Updated last month
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆25Updated 10 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆21Updated 3 months ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated last month
- native Python dataclasses for the OME data model☆65Updated 3 weeks ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆59Updated this week
- High quality visualization for volumetric image data☆55Updated this week
- ☆41Updated this week
- Optimize image processing workflows in napari☆17Updated 9 months ago
- Python libraries for loading, running and packaging bioimage.io models☆35Updated last week
- Multiple file format reading directly into napari using pure Python☆39Updated 3 months ago