transformify-plugins / segmentifyLinks
Python image segmentation plugin
☆31Updated 4 years ago
Alternatives and similar repositories for segmentify
Users that are interested in segmentify are comparing it to the libraries listed below
Sorting:
- Python module for registering and fusing multi-view microscopy data☆24Updated 9 months ago
- Cookiecutter for napari plugins☆71Updated last year
- Track and lineage visualization with btrack and Napari☆45Updated 2 months ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated last week
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Updated 2 months ago
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 4 years ago
- ☆23Updated 4 years ago
- StarDist plugin for napari☆38Updated last year
- python tools for BigDataViewer☆22Updated 11 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Updated last year
- Easily read and write ome-tiff images in python☆28Updated last year
- Python libraries for loading, running and packaging bioimage.io models☆34Updated 2 weeks ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated last month
- Tools for distributed alignment of massive images☆89Updated 2 months ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆55Updated 2 weeks ago
- Command-line client for Fractal☆47Updated last week
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 4 years ago
- ☆33Updated 7 months ago
- ☆41Updated this week
- Visualizing feature measurements on label images in napari☆10Updated last year
- Specification for the bioimage.io model description file.☆21Updated last week
- High quality visualization for volumetric image data☆53Updated this week
- Accelerated Pixel and Object Classifiers (APOC)☆58Updated 4 months ago
- 1d plotting in napari-based canvas.☆25Updated last week
- Feature extraction for labeled objects in images using regionprops from scikit-image☆52Updated 7 months ago
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45Updated 7 months ago
- Multiple file format reading directly into napari using pure Python☆39Updated last month
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆22Updated 4 months ago