transformify-plugins / segmentifyLinks
Python image segmentation plugin
☆31Updated 4 years ago
Alternatives and similar repositories for segmentify
Users that are interested in segmentify are comparing it to the libraries listed below
Sorting:
- Python module for registering and fusing multi-view microscopy data☆23Updated 7 months ago
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- Track and lineage visualization with btrack and Napari☆46Updated last week
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆17Updated this week
- ☆23Updated 4 years ago
- Easily read and write ome-tiff images in python☆27Updated last year
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated this week
- ☆51Updated last week
- my first baby steps with Napari☆10Updated 5 years ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆18Updated 5 months ago
- Cookiecutter for napari plugins☆70Updated 11 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Updated last year
- Tools for distributed alignment of massive images☆86Updated 3 weeks ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 4 years ago
- StarDist plugin for napari☆39Updated last year
- native Python dataclasses for the OME data model☆61Updated last week
- Accelerated Pixel and Object Classifiers (APOC)☆58Updated 2 months ago
- A multi-dimensional spatial image data structure for scientific Python.☆43Updated 2 months ago
- ☆32Updated 5 months ago
- python tools for BigDataViewer☆22Updated 9 months ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆54Updated 2 months ago
- A napari plugin for clustering objects according to their properties.☆88Updated this week
- Specification for the bioimage.io model description file.☆21Updated last week
- Python libraries for loading, running and packaging bioimage.io models☆33Updated this week
- Browse your OMERO database from within napari.☆39Updated last week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 6 months ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆50Updated last week
- Multiple file format reading directly into napari using pure Python☆37Updated last year
- A library to facilitate machine learning on multi-dimensional images.☆86Updated last week
- Particle tracking by solving linear assignment problem.☆57Updated last week