transformify-plugins / segmentify
Python image segmentation plugin
☆31Updated 4 years ago
Alternatives and similar repositories for segmentify
Users that are interested in segmentify are comparing it to the libraries listed below
Sorting:
- Easily read and write ome-tiff images in python☆27Updated last year
- Python module for registering and fusing multi-view microscopy data☆23Updated 2 months ago
- Create movies from series of key-frames in napari.☆38Updated 3 years ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated last week
- my first baby steps with Napari☆10Updated 5 years ago
- Track and lineage visualization with btrack and Napari☆45Updated 6 months ago
- ☆22Updated 4 years ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated this week
- Cookiecutter for napari plugins☆69Updated 6 months ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 4 years ago
- ☆24Updated 2 weeks ago
- Utils and convenience functions for large-scale bio-image analysis.☆55Updated this week
- Visualizing feature measurements on label images in napari☆10Updated 9 months ago
- imaging demos☆9Updated 2 years ago
- StarDist plugin for napari☆38Updated 8 months ago
- Process images using SimpleITK in napari☆21Updated 2 weeks ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 3 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 8 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 2 weeks ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 3 years ago
- ☆13Updated 5 years ago
- ☆23Updated last week
- Multiple file format reading directly into napari using pure Python☆36Updated 9 months ago
- native Python dataclasses for the OME data model☆56Updated last week
- ☆41Updated this week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 6 months ago
- A napari plugin for clustering objects according to their properties.☆85Updated this week
- Tools for distributed alignment of massive images☆81Updated last month
- Optimize image processing workflows in napari☆17Updated 2 weeks ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated 2 weeks ago