yfukai / m2stitchView external linksLinks
MIST-inspired microscope image stitching package
☆80Jan 29, 2026Updated 2 weeks ago
Alternatives and similar repositories for m2stitch
Users that are interested in m2stitch are comparing it to the libraries listed below
Sorting:
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆162Updated this week
- Microscopy Image Stitching Tool☆164Aug 15, 2025Updated 5 months ago
- Panoramic image generation from 2D microscope images☆19Jun 17, 2021Updated 4 years ago
- A Python toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆105Updated this week
- ☆92Nov 5, 2025Updated 3 months ago
- Microscope image stitching☆46Apr 18, 2024Updated last year
- Montaging for microscopy imaging files☆30Nov 15, 2025Updated 2 months ago
- Speed up coding/extending image analysis in Python.☆37Jan 20, 2026Updated 3 weeks ago
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 4 years ago
- pyHPC workshop☆11May 17, 2022Updated 3 years ago
- Fast and robust feature-based stitching algorithm for microscopic images☆15Jun 28, 2024Updated last year
- Accelerated Pixel and Object Classifiers (APOC)☆59Jul 18, 2025Updated 6 months ago
- ☆24Jun 6, 2023Updated 2 years ago
- ☆23Mar 26, 2021Updated 4 years ago
- ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.☆46Nov 13, 2025Updated 3 months ago
- Paint segmentations directly to on-disk/remote zarr arrays☆15Jun 26, 2024Updated last year
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆35Apr 4, 2025Updated 10 months ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 3 months ago
- Python image segmentation plugin☆31Jan 13, 2021Updated 5 years ago
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆64Mar 12, 2025Updated 11 months ago
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- Teaching materials and outline for the Pasteur Bioimage Analysis vour☆16Jun 2, 2025Updated 8 months ago
- ITK IO for images stored in OME-Zarr format.☆11Sep 4, 2025Updated 5 months ago
- Real-time image-based autofocus for all wide-field optical microscopy systems☆12Mar 24, 2022Updated 3 years ago
- Piecewise alignment for layers of mosaics☆36Sep 2, 2025Updated 5 months ago
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated last year
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Nov 6, 2025Updated 3 months ago
- Command-line client for Fractal☆48Updated this week
- SCIFIO ImageIO plugin for ITK☆16Nov 12, 2025Updated 3 months ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- native Python dataclasses for the OME data model☆65Updated this week
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Aug 22, 2024Updated last year
- Python tool for stitching histopathology tissue fragments into artificial whole-mounts.☆23Dec 5, 2025Updated 2 months ago
- Multiple-choice microscopy pipeline☆145Jan 27, 2026Updated 2 weeks ago
- GPU accelerated image/volume processing in Python☆113Updated this week
- Python control of micro-manager for customized data acquisition☆178Aug 21, 2025Updated 5 months ago
- Cookiecutter for napari plugins☆71Nov 6, 2024Updated last year
- RAPID: a Real-time, GPU-Accelerated Parallelized Image processing software for large-scale multiplexed fluorescence microscopy Data☆12Dec 3, 2022Updated 3 years ago
- ☆14Jan 7, 2026Updated last month