Self-supervised models for encoding protein localization patterns from microscopy images
☆85Aug 5, 2025Updated 11 months ago
Alternatives and similar repositories for cytoself
Users that are interested in cytoself are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Conditional Autoencoders for Multiplexed Pixel Analysis☆19Nov 25, 2022Updated 3 years ago
- a machine learning model to identify nucleotide features determining RNA subcellular localization☆13Mar 11, 2023Updated 3 years ago
- MultiModal Big Image Data Sharing and Exploration☆20Jan 13, 2023Updated 3 years ago
- Codebase for training the SubCell models☆23Jun 29, 2026Updated last week
- [Nature Communications] O2VAE: a model for orientation-invariant representation learning (phenotyping) in cell biology data☆39Mar 26, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Images and other data from the JUMP Cell Painting Consortium☆186Jun 29, 2026Updated last week
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 7 months ago
- simple standalone BigDataViewer for multiple N5 (or HDF5) datasets☆12Mar 6, 2026Updated 4 months ago
- Single-Molecule Localization Microscopy - Software Benchmarking - Challenge 2016☆19Jan 26, 2019Updated 7 years ago
- Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.☆18Aug 8, 2025Updated 10 months ago
- Python API and Jupyter widget for Vitessce☆67Jun 10, 2026Updated 3 weeks ago
- ☆10Jul 10, 2024Updated last year
- ☆19Mar 21, 2024Updated 2 years ago
- Raw format to OME-TIFF converter☆57Apr 24, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Morphological profiling using deep learning☆127Jun 20, 2026Updated 2 weeks ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated 11 months ago
- native Python dataclasses for the OME data model☆67Apr 2, 2026Updated 3 months ago
- ☆13Dec 7, 2021Updated 4 years ago
- Lazily load multiscale whole-slide images with openslide and dask☆33Dec 6, 2022Updated 3 years ago
- ☆17Jul 8, 2024Updated last year
- Microscopy Image Cytometry Toolkit☆116Jul 15, 2022Updated 3 years ago
- ☆18Nov 25, 2025Updated 7 months ago
- OME model (specification, code generator, implementation)☆17Jun 3, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Threshold independent detection and localization of diffraction-limited spots.☆39Apr 8, 2026Updated 2 months ago
- Official imagej plugin of the "SACD" -v1.1.3☆12Feb 8, 2024Updated 2 years ago
- Spatial Single-Cell Analysis Toolkit☆113Mar 11, 2026Updated 3 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆87Nov 16, 2025Updated 7 months ago
- ImageJ/TensorFlow integration library☆26Oct 1, 2025Updated 9 months ago
- Extensible pipeline tool for processing optical pooled screens data.☆26Jun 26, 2026Updated last week
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆244Apr 24, 2026Updated 2 months ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆53Feb 4, 2025Updated last year
- Interactive visualization of spatial omics data☆87Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Accelerated Pixel and Object Classifiers (APOC)☆62Apr 24, 2026Updated 2 months ago
- A minimal Zarr image viewer based on Viv.☆197Jun 22, 2026Updated 2 weeks ago
- sciview is a tool for visualization and interaction with ND image and mesh data☆75Jun 22, 2026Updated 2 weeks ago
- Data and code to accompany our Nature publication☆49May 3, 2022Updated 4 years ago
- This repo will contain the code for training DINO models and extracting features☆16Aug 4, 2023Updated 2 years ago
- A stable diffusion demo for napari☆11Jun 7, 2026Updated last month
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆34Apr 9, 2026Updated 2 months ago