royerlab / cytoself
Self-supervised models for encoding protein localization patterns from microscopy images
☆76Updated 7 months ago
Alternatives and similar repositories for cytoself:
Users that are interested in cytoself are comparing it to the libraries listed below
- ☆60Updated last month
- Cloud-based data annotation tools for biological images☆79Updated last year
- computer vision models for single-cell phenotyping☆44Updated this week
- CellProfiler tutorial pipelines and images☆94Updated 3 weeks ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 2 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- Python package for processing image-based profiling data☆109Updated last week
- ☆31Updated 2 years ago
- Your Personal Assistant in Computational Bioimaging.☆40Updated 2 weeks ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆21Updated 3 years ago
- Label Free Prediction of Cell Painting from Brightfield Images☆29Updated 2 years ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆53Updated last year
- Learn morphological states of dynamic cells☆12Updated last year
- ☆45Updated last month
- Spatial Single-Cell Analysis Toolkit☆91Updated 2 weeks ago
- Cell Painting Gallery☆82Updated 3 weeks ago
- Jupyter notebooks for CellProfiler and friends☆13Updated 7 years ago
- An introduction to deepcell and deep learning☆145Updated 5 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated last week
- ☆23Updated last year
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆28Updated 8 months ago
- Optimizing the Cell Painting assay for image-based profiling☆19Updated 3 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆53Updated 2 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 5 months ago
- ☆32Updated last year
- Morphological profiling using deep learning☆116Updated 5 months ago
- Integrated pipeline for multiplexed image analysis☆86Updated 2 weeks ago
- Deep learning based spot detection for FISH images.☆21Updated 8 months ago
- RAnking Markers for CEll Segmentation☆11Updated 3 years ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 3 weeks ago