Alternatives and similar repositories for pgs-calc

Users that are interested in pgs-calc are comparing it to the libraries listed below

• freeseek / mocha
  MOsaic CHromosomal Alterations (MoChA) caller
  ☆88Updated 2 months ago
• mhguo1 / TRAPD
  Burden testing against public controls
  ☆50Updated last year
• freeseek / gwaspipeline
  ☆40Updated 7 years ago
• immunogenomics / HLA-TAPAS
  HLA-TAPAS pipeline for HLA association and fine-mapping studies
  ☆54Updated last year
• eQTL-Catalogue / qtlmap
  Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
  ☆56Updated last month
• CshlSiepelLab / LINSIGHT
  ☆27Updated 5 months ago
• naumanjaved / fingerprint_maps
  Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…
  ☆28Updated last year
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆70Updated 2 years ago
• Wedge-lab / battenberg
  Battenberg R package for subclonal copynumber estimation
  ☆92Updated 4 months ago
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆83Updated last week
• genepi / nf-gwas
  A nextflow pipeline to perform state-of-the-art genome-wide association studies.
  ☆77Updated last month
• joepickrell / 1000-genomes-genetic-maps
  Genetic maps interpolated to sites in the 1000 Genomes project
  ☆50Updated 10 years ago
• xihaoli / STAARpipeline
  An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
  ☆67Updated 7 months ago
• atgu / hgdp_tgp
  ☆46Updated 4 months ago
• biocore-ntnu / snpflip
  Report reverse and ambiguous strand SNPs in GWAS data
  ☆33Updated 6 years ago
• qtltools / qtltools
  A complete tool set for molecular QTL discovery and analysis
  ☆58Updated last year
• Illumina / GTCtoVCF
  Script to convert GTC/BPM files to VCF
  ☆47Updated last month
• freeseek / score
  Tools to work with GWAS-VCF summary statistics files
  ☆126Updated 3 months ago
• genepi / imputationserver
  Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves u…
  ☆82Updated last year
• vplagnol / ExomeDepth
  ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.
  ☆74Updated 4 months ago
• GooglingTheCancerGenome / sv-callers
  Snakemake-based workflow for detecting structural variants in genomic data
  ☆80Updated 9 months ago
• broadinstitute / gnomad_qc
  ☆68Updated this week
• gagneurlab / OUTRIDER
  OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
  ☆54Updated 3 weeks ago
• mskcc / mutation-signatures
  Create mutation signatures from MAF's, and decompose them into Stratton signatures
  ☆60Updated 6 years ago
• secastel / phaser
  phasing and Allele Specific Expression from RNA-seq
  ☆116Updated last year
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆52Updated 3 months ago
• PapenfussLab / StructuralVariantAnnotation
  R package designed to simplify structural variant analysis
  ☆73Updated 3 years ago
• AndreasHeger / gat
  Genomic Association Tester
  ☆34Updated 2 years ago
• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆86Updated 7 years ago
• gkichaev / PAINTOR_V3.0
  Fast, integrative fine mapping with functional data
  ☆61Updated 6 years ago