Alternatives and similar repositories for genetics-sumstat-harmoniser:

Users that are interested in genetics-sumstat-harmoniser are comparing it to the libraries listed below

• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆50Updated 7 months ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆52Updated 5 months ago
• clagiamba / moloc
  ☆35Updated 4 years ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆31Updated last year
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆49Updated 2 months ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆59Updated 6 months ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆31Updated 4 years ago
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆46Updated 3 weeks ago
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆46Updated 6 months ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 7 years ago
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆48Updated 4 years ago
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆75Updated this week
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆44Updated last year
• EBISPOT / gwas-sumstats-harmoniser
  GWAS Summary Statistics Data Harmonisation
  ☆22Updated 3 months ago
• FinucaneLab / pops
  ☆78Updated 2 years ago
• astheeggeggs / PHESANT
  PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
  ☆19Updated 2 years ago
• xtonyjiang / GNOVA
  A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.
  ☆28Updated 11 months ago
• mikegloudemans / gwas-download
  Easily download publicly available GWAS summary statistics.
  ☆76Updated last year
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆47Updated 3 weeks ago
• MRC-Epid / pGWAS_discovery
  Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"
  ☆23Updated 3 years ago
• CBIIT / LDlinkR
  LDlinkR
  ☆59Updated last year
• thewonlab / H-MAGMA
  ☆32Updated last year
• Geeketics / LocusZooms
  Make LocusZoom-like plots with your own LD matrix.
  ☆40Updated 2 years ago
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated last year
• gkichaev / PAINTOR_V3.0
  Fast, integrative fine mapping with functional data
  ☆57Updated 5 years ago
• jrs95 / hyprcoloc
  Hypothesis Prioritisation in multi-trait Colocalization
  ☆52Updated last year
• opain / GenoPred
  Genotype-based Prediction (GenoPred)
  ☆72Updated this week
• meyer-lab-cshl / plinkQC
  R package for quality control of plink genetic datasets
  ☆58Updated 4 months ago
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆81Updated 2 years ago
• mkanai / ldsc-corrplot-rg
  corrplot of LDSC genetic correlation results
  ☆51Updated 3 years ago