Alternatives and similar repositories for genetics-sumstat-harmoniser:

Users that are interested in genetics-sumstat-harmoniser are comparing it to the libraries listed below

• clagiamba / moloc
  ☆34Updated 4 years ago
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆50Updated 6 months ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆44Updated last year
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆48Updated 2 months ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 6 years ago
• EBISPOT / gwas-sumstats-harmoniser
  GWAS Summary Statistics Data Harmonisation
  ☆22Updated 3 months ago
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆44Updated 2 years ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆51Updated 4 months ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆31Updated last year
• astheeggeggs / PHESANT
  PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
  ☆19Updated 2 years ago
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆46Updated this week
• Annefeng / PBK-QC-pipeline
  Partners Biobank genomics data QC
  ☆26Updated 5 years ago
• mikegloudemans / gwas-download
  Easily download publicly available GWAS summary statistics.
  ☆76Updated last year
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆74Updated 3 weeks ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆31Updated 4 years ago
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆81Updated 2 years ago
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆46Updated 5 months ago
• CBIIT / LDlinkR
  LDlinkR
  ☆58Updated 11 months ago
• getian107 / PRScsx
  Cross-population polygenic prediction
  ☆79Updated 4 months ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆59Updated 5 months ago
• thewonlab / H-MAGMA
  ☆32Updated last year
• RitchieLab / eQTpLot
  Visualization of Colocalization Between eQTL and GWAS Data
  ☆83Updated 2 years ago
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆48Updated 4 years ago
• opain / GenoPred
  Genotype-based Prediction (GenoPred)
  ☆72Updated this week
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆106Updated 4 months ago
• FinucaneLab / pops
  ☆76Updated 2 years ago
• weizhou0 / GATE
  ☆22Updated last year
• gabraham / plink2R
  Read PLINK BED/BIM/FAM files into R
  ☆40Updated 3 years ago
• joepickrell / gwas-pw
  Pariwise analysis of GWAS
  ☆43Updated 6 years ago
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated last year