R script that performs gene-set or gene property analysis using TWAS results.
☆32Sep 11, 2024Updated last year
Alternatives and similar repositories for TWAS-GSEA
Users that are interested in TWAS-GSEA are comparing it to the libraries listed below
Sorting:
- R script for generating functionally informed genetic risk scores from TWAS☆11Jul 20, 2023Updated 2 years ago
- Tool for predicting TWAS features (e.g. gene expression) in a target sample☆16Jun 24, 2025Updated 8 months ago
- Transcriptome-wide association study of Major Depressive Disorder☆12Sep 17, 2020Updated 5 years ago
- This is a pipeline for calculating weights for TWAS☆33Aug 3, 2022Updated 3 years ago
- R script to make Manhattan-style plot for TWAS☆41Aug 15, 2021Updated 4 years ago
- Genotype-based Prediction (GenoPred)☆77Feb 20, 2026Updated last week
- Leveraging functional information to improve GWAS summary statistic imputation☆19Aug 10, 2021Updated 4 years ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆14Jul 2, 2025Updated 8 months ago
- Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.☆24Sep 4, 2025Updated 6 months ago
- LOGODetect is a powerful tool to identify small segments that harbor local genetic correlation between two traits/diseases.☆28Jul 30, 2025Updated 7 months ago
- ☆20Sep 12, 2025Updated 5 months ago
- hJAM is a hierarchical model which unifies the framework of Mendelian Randomization and Transcriptome-wide association studies.☆10Jan 19, 2024Updated 2 years ago
- Workflow for performing cistrome-wide associations studies☆11Jul 25, 2022Updated 3 years ago
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Mar 24, 2023Updated 2 years ago
- Software to infer latent pleiotropic components from GWAS summary data☆15Jan 30, 2025Updated last year
- ☆15Apr 20, 2021Updated 4 years ago
- ☆21Nov 15, 2024Updated last year
- Stratified squared trans-ethnic genetic correlation☆14May 12, 2022Updated 3 years ago
- Mediated Expression Score Regression (MESC)☆27Nov 4, 2025Updated 4 months ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Oct 6, 2023Updated 2 years ago
- GWAS-TWAS (Transcriptome-wide association study)-Pharmacological library integration pipeline☆19Mar 30, 2021Updated 4 years ago
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆39Sep 18, 2025Updated 5 months ago
- Integration of TWAS and Colocalization Analysis☆17Oct 29, 2024Updated last year
- ☆57Jan 16, 2025Updated last year
- MR-link-2: pleiotropy robust cis MR☆21Aug 4, 2025Updated 7 months ago
- Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies☆11Sep 1, 2022Updated 3 years ago
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆43Jan 20, 2023Updated 3 years ago
- Fine-mapping method only using summary statistics☆20Mar 23, 2016Updated 9 years ago
- ☆92Jul 21, 2025Updated 7 months ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Jun 27, 2023Updated 2 years ago
- Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …☆29Jun 18, 2023Updated 2 years ago
- A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.☆31Jun 4, 2024Updated last year
- Discovery of genetic variants with shared effect across multiple phenotypes from GWAS summary statistics☆14Oct 27, 2023Updated 2 years ago
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆16Dec 1, 2025Updated 3 months ago
- Create Regional Association Plots☆13Sep 7, 2025Updated 5 months ago
- ☆24Jan 8, 2026Updated last month
- Multi-Omic Strategies for TWAS☆13Mar 27, 2023Updated 2 years ago
- Code and simulations using interaction-LD score regression☆13Jul 2, 2024Updated last year
- A software package for performing and visualising radial multivariable Mendelian randomization analyses☆12Nov 28, 2025Updated 3 months ago