We propose STG3Net, a novel method designed to integrate multiple SRT datasets and correct batch effects.
☆14Aug 8, 2024Updated last year
Alternatives and similar repositories for STG3Net
Users that are interested in STG3Net are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Masked Graph Autoencoders with Contrastive Augmentation for Spatially Resolved Transcriptomics Data☆19Aug 7, 2024Updated last year
- Pretrained-Guided Masked Conditional Diffusion Models for Microbiome Data Analysis☆14Aug 7, 2024Updated last year
- Masked adversarial neural network for cell type deconvolution (MACD) in spatial transcriptomics data☆14Jun 16, 2025Updated 11 months ago
- scASDC is an attention enhanced structural deep clustering method for scRNA-seq cell clustering☆17Aug 8, 2024Updated last year
- SpaDiT: Diffusion Transformer for Spatial Gene Expression Prediction using scRNA-seq☆25Jun 2, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Deep Clustering Representation for Spatially Resolved Transcriptomics Data via Multi-view Variational Graph Auto-Encoders with Consensus …☆15Jun 24, 2025Updated 11 months ago
- ☆16May 27, 2024Updated 2 years ago
- [Briefings in Bioinformatics 2025] A GCN and pathology image large model-based method to predict single-cell resolution spatial gene expr…☆26Dec 1, 2025Updated 6 months ago
- High-Resolution Spatial Transcriptomics Using Histology Images with HisToSGE (Pathology Image Large Model, Transformers)☆22Jul 24, 2024Updated last year
- mclSTExp: Multimodal Contrastive Learning for Spatial Gene Expression Prediction Using Histology Images☆42Jan 10, 2025Updated last year
- [Advanced Science 2025] SpaBatch: Deep learning-based cross-slice integration and 3D spatial domain identification in spatial transcripto…☆19Nov 27, 2025Updated 6 months ago
- A self-supervised learning method with Vision Transformer as backbone network for resolution enhancement in spatial transcriptomics.☆10Aug 25, 2025Updated 9 months ago
- [PLoS Computational Biology 2025] Domain-Adversarial Masked Autoencoder (SpaDAMA) for cell type deconvolution in spatial transcriptomics …☆12Nov 6, 2025Updated 7 months ago
- We propose SpatialCVGAE, which uses multiple variational graph autoencoders with different initializations to simultaneously generate cor…☆13Jun 24, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Transformer-based deep learning for spatial transcriptomics enhancement.☆12Mar 15, 2024Updated 2 years ago
- [PLoS Computational Biology 2025] SpaMask: Dual Masking Graph Autoencoder with Contrastive Learning for Spatial Transcriptomics☆13Apr 8, 2025Updated last year
- Identify spatial domain☆92May 29, 2025Updated last year
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- ☆11Sep 7, 2023Updated 2 years ago
- This is a thesis template for Yunnan University, which is suitable for master students! 这里是一个云南大学硕士毕业论文模板latex。该模板是根据其云南大学毕业模板要求撰写,分享供大家使…☆17Jul 26, 2018Updated 7 years ago
- Source code from the book Machine Learning in Action, corrected the errors, updated according to python 3.X☆15Mar 3, 2019Updated 7 years ago
- ☆17Feb 18, 2025Updated last year
- A scheduler to manage a multi tool dual arm robot while avoiding arm-to-arm collisions; considering complex side constraints; and optimiz…☆11Jul 6, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples☆31Mar 26, 2026Updated 2 months ago
- ☆12May 21, 2025Updated last year
- ☆70Nov 6, 2024Updated last year
- Code for the spatialLIBD R/Bioconductor package and shiny app☆113May 20, 2026Updated 3 weeks ago
- Analaysis for the batch correction paper☆12Apr 26, 2025Updated last year
- ☆63Jul 23, 2024Updated last year
- ☆14Jan 25, 2023Updated 3 years ago
- This repository contains the code for all figures in the paper "General Pitfalls of Model-agnostic Interpretation Methods for Machine Lea…☆15Aug 17, 2021Updated 4 years ago
- CDbw Index For Cluster Validation☆10Mar 26, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Computing the gap statistics from Tibshirani et. al. for various clustering algorithms☆13Nov 10, 2025Updated 7 months ago
- A flexible two-column Jekyll theme. Perfect for personal sites, blogs, and portfolios hosted on GitHub or your own server.☆25Jul 11, 2024Updated last year
- Code for the Kaggle Marinexplore challenge☆17Apr 8, 2013Updated 13 years ago
- FISH Iterative Cell Typing☆11Mar 24, 2024Updated 2 years ago
- Code repository for the paper "Towards a Comprehensive Evaluation of Dimension Reduction Methods for Data Visualization"☆15Jul 4, 2024Updated last year
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- ☆11Jul 13, 2021Updated 4 years ago