wenwenmin / STG3NetLinks
We propose STG3Net, a novel method designed to integrate multiple SRT datasets and correct batch effects.
☆14Updated last year
Alternatives and similar repositories for STG3Net
Users that are interested in STG3Net are comparing it to the libraries listed below
Sorting:
- Masked adversarial neural network for cell type deconvolution (MACD) in spatial transcriptomics data☆14Updated 7 months ago
- Masked Graph Autoencoders with Contrastive Augmentation for Spatially Resolved Transcriptomics Data☆18Updated last year
- Deep Clustering Representation for Spatially Resolved Transcriptomics Data via Multi-view Variational Graph Auto-Encoders with Consensus …☆15Updated 7 months ago
- ☆13Updated last year
- Pretrained-Guided Masked Conditional Diffusion Models for Microbiome Data Analysis☆14Updated last year
- [Briefings in Bioinformatics 2025] A GCN and pathology image large model-based method to predict single-cell resolution spatial gene expr…☆25Updated 2 months ago
- A self-supervised learning method with Vision Transformer as backbone network for resolution enhancement in spatial transcriptomics.☆10Updated 5 months ago
- ☆16Updated last year
- [PLoS Computational Biology 2025] Domain-Adversarial Masked Autoencoder (SpaDAMA) for cell type deconvolution in spatial transcriptomics …☆11Updated 3 months ago
- [Advanced Science 2025] SpaBatch: Deep learning-based cross-slice integration and 3D spatial domain identification in spatial transcripto…☆18Updated 2 months ago
- [PLoS Computational Biology 2025] SpaMask: Dual Masking Graph Autoencoder with Contrastive Learning for Spatial Transcriptomics☆13Updated 10 months ago
- We propose SpatialCVGAE, which uses multiple variational graph autoencoders with different initializations to simultaneously generate cor…☆13Updated 7 months ago
- scASDC is an attention enhanced structural deep clustering method for scRNA-seq cell clustering☆17Updated last year
- Identify spatial domain☆88Updated 8 months ago
- High-Resolution Spatial Transcriptomics Using Histology Images with HisToSGE (Pathology Image Large Model, Transformers)☆20Updated last year
- ☆66Updated last year
- ☆19Updated 2 weeks ago
- ☆43Updated last year
- The source code for "High-Parameter Spatial Multi-Omics through Histology-Anchored Integration"☆25Updated 2 weeks ago
- ☆158Updated last year
- conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics☆29Updated last year
- ☆41Updated 2 years ago
- ☆63Updated 4 months ago
- Her2 Breast Cancer Project☆93Updated 3 years ago
- ☆14Updated 3 years ago
- ☆28Updated 10 months ago
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆34Updated 6 months ago
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆25Updated last week
- Probabilistic topic model for identifying cellular micro-environments.☆28Updated 2 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆80Updated 3 years ago