BiomedicalMachineLearning / SpacellLinks
☆27Updated 5 years ago
Alternatives and similar repositories for Spacell
Users that are interested in Spacell are comparing it to the libraries listed below
Sorting:
- An R package for performing cell typing in SMI and other single cell data☆42Updated 5 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Updated 4 months ago
- Methods for visualization and analysis of spatially-resolved gene expression☆21Updated 2 months ago
- CAST package☆40Updated last year
- ☆45Updated 3 months ago
- ☆19Updated 6 years ago
- ☆29Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 8 months ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Updated 2 years ago
- ☆39Updated last year
- ☆53Updated 2 years ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆39Updated 7 months ago
- SPATA Package for spatial gene expression analysis☆21Updated 3 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆61Updated 2 months ago
- Test genes for Spatial Variation☆15Updated 10 months ago
- Analyzing cellular niches in spatial transcriptomics data☆31Updated 11 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated last year
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆46Updated 4 years ago
- spatial transcriptome, single cell☆71Updated 2 years ago
- Spatial direct messaging detected by bivariate Moran☆30Updated 3 months ago
- Interactive applications of stlearn☆15Updated 2 years ago
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Updated last year
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Updated 2 years ago
- Multi-modal single cell analysis pipelines☆59Updated this week
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 4 years ago
- ☆22Updated 3 years ago
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆49Updated 3 years ago
- Interoperability between SpatialData and the Xenium Explorer☆24Updated last year
- Information-based dimensionality reduction☆29Updated 10 months ago