BiomedicalMachineLearning / SpacellLinks
β27Updated 6 years ago
Alternatives and similar repositories for Spacell
Users that are interested in Spacell are comparing it to the libraries listed below
Sorting:
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics π₯π¬β¨β56Updated 6 months ago
- CAST packageβ42Updated last year
- β30Updated last year
- Methods for visualization and analysis of spatially-resolved gene expressionβ21Updated 5 months ago
- An R package for performing cell typing in SMI and other single cell dataβ46Updated 8 months ago
- CeLEry: cell location recovery in single-cell RNA sequencingβ35Updated 11 months ago
- SPATA Package for spatial gene expression analysisβ21Updated 3 years ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct featuresβ22Updated last week
- Quasilinear data representations for single-cell omics data analysisβ43Updated 2 years ago
- β19Updated 6 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.β65Updated this week
- β22Updated 3 years ago
- Spatial direct messaging detected by bivariate Moranβ32Updated 6 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2β41Updated 10 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneityβ30Updated last year
- Spatially-resolved Transcriptomics via Epitope Anchoringβ19Updated last year
- β53Updated 2 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectoriesβ44Updated 3 years ago
- β47Updated 5 months ago
- β32Updated 10 months ago
- β23Updated 2 years ago
- Interactive applications of stlearnβ15Updated 2 years ago
- Test genes for Spatial Variationβ15Updated last year
- β40Updated last week
- Reproducing all analyses and figures for the ASAP-seq paperβ29Updated 4 years ago
- Interoperability between SpatialData and the Xenium Explorerβ25Updated last year
- Code for Universal Single-Cell Matching with Unpaired Feature Setsβ22Updated 4 years ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular densβ¦β82Updated 3 years ago
- Information-based dimensionality reductionβ29Updated last year
- Spatial analysis toolkit for single cell multiplexed tissue dataβ30Updated last year