BiomedicalMachineLearning / SpacellLinks
β27Updated 6 years ago
Alternatives and similar repositories for Spacell
Users that are interested in Spacell are comparing it to the libraries listed below
Sorting:
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics π₯π¬β¨β56Updated 7 months ago
- Methods for visualization and analysis of spatially-resolved gene expressionβ22Updated 5 months ago
- β30Updated last year
- An R package for performing cell typing in SMI and other single cell dataβ48Updated 8 months ago
- CAST packageβ42Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencingβ37Updated 11 months ago
- SPATA Package for spatial gene expression analysisβ21Updated 3 years ago
- β41Updated last week
- β32Updated 11 months ago
- β53Updated 2 years ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct featuresβ22Updated 3 weeks ago
- β23Updated 2 years ago
- MultiMAP for integration of single cell multi-omicsβ55Updated 2 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2β42Updated 11 months ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular densβ¦β84Updated 3 years ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneityβ30Updated last year
- Code for Universal Single-Cell Matching with Unpaired Feature Setsβ22Updated 4 years ago
- β19Updated 6 years ago
- Quasilinear data representations for single-cell omics data analysisβ43Updated 2 years ago
- β22Updated 3 years ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).β24Updated 4 months ago
- Spatially-resolved Transcriptomics via Epitope Anchoringβ19Updated last year
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.β48Updated 4 years ago
- β47Updated 6 months ago
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentationβ52Updated 3 years ago
- Spatial direct messaging detected by bivariate Moranβ32Updated 6 months ago
- Interoperability between SpatialData and the Xenium Explorerβ25Updated last year
- Analyzing cellular niches in spatial transcriptomics dataβ34Updated last year
- Test genes for Spatial Variationβ15Updated last year
- SPROD: Spatial expression profiling de-noisingβ36Updated 2 years ago