wenwenmin / SpaBatchLinks
[Advanced Science 2025] SpaBatch: Deep learning-based cross-slice integration and 3D spatial domain identification in spatial transcriptomics
☆17Updated last month
Alternatives and similar repositories for SpaBatch
Users that are interested in SpaBatch are comparing it to the libraries listed below
Sorting:
- ☆15Updated 2 months ago
- ☆157Updated last year
- [Briefings in Bioinformatics 2025] A GCN and pathology image large model-based method to predict single-cell resolution spatial gene expr…☆25Updated last month
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆91Updated last year
- We propose SpatialCVGAE, which uses multiple variational graph autoencoders with different initializations to simultaneously generate cor…☆13Updated 6 months ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆64Updated last year
- Masked adversarial neural network for cell type deconvolution (MACD) in spatial transcriptomics data☆14Updated 6 months ago
- [PLoS Computational Biology 2025] SpaMask: Dual Masking Graph Autoencoder with Contrastive Learning for Spatial Transcriptomics☆13Updated 9 months ago
- ☆66Updated last year
- ☆60Updated last year
- Identify spatial domain☆87Updated 7 months ago
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆34Updated 5 months ago
- Bayesian Analytics for Spatial Segmentation☆30Updated 8 months ago
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆50Updated last year
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆79Updated 3 years ago
- Masked Graph Autoencoders with Contrastive Augmentation for Spatially Resolved Transcriptomics Data☆18Updated last year
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆40Updated last year
- Super-resolved spatial transcriptomics by deep data fusion☆73Updated 2 years ago
- MorphLink: Bridging Cellular Morphological Behaviors and Molecular Dynamics in Multi-modal Spatial Omics☆16Updated last month
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- ☆22Updated 3 years ago
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆29Updated 2 years ago
- Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms☆42Updated 2 months ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆46Updated last year
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆112Updated this week
- ☆32Updated 2 years ago
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆25Updated 10 months ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Updated 9 months ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆34Updated 9 months ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆128Updated 7 months ago