atarashansky / SAMapLinks
SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.
☆79Updated last year
Alternatives and similar repositories for SAMap
Users that are interested in SAMap are comparing it to the libraries listed below
Sorting:
- ☆21Updated last year
- single-cell clustering based on alternative splicing landscapes☆21Updated last year
- Analysis of Paired-Tag datasets☆42Updated last year
- SNV calling from single cell sequencing☆105Updated 9 months ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆70Updated 9 months ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆51Updated last year
- ☆114Updated 5 months ago
- Links to ATAC-seq analysis tools☆69Updated 4 years ago
- Repository for Cibersortx☆61Updated 4 years ago
- Notes on single-cell Hi-C technologies, tools, and data☆80Updated 10 months ago
- An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets☆106Updated 3 weeks ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 3 years ago
- ☆109Updated last year
- Single Cell Analysis of Five'Ends☆50Updated last year
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆79Updated 3 years ago
- Efficient genotyping bi-allelic SNPs on single cells☆146Updated last year
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆63Updated 2 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆116Updated 3 months ago
- SCSA: cell type annotation for single-cell RNA-seq data☆91Updated 2 years ago
- Tools which deal with multiple single cell measurements☆24Updated 2 weeks ago
- Tools for single-cell data processing☆126Updated last year
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆77Updated 4 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 7 months ago
- Analysis pipeline for ATAC-seq Data☆61Updated 3 years ago
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆31Updated 2 years ago
- Basic workflow for ATAC-seq analysis☆83Updated last year
- ☆61Updated 5 years ago
- ☆32Updated last year