Transformer-based deep learning for spatial transcriptomics enhancement.
☆12Mar 15, 2024Updated last year
Alternatives and similar repositories for stEnTrans
Users that are interested in stEnTrans are comparing it to the libraries listed below
Sorting:
- [PLoS Computational Biology 2025] SpaMask: Dual Masking Graph Autoencoder with Contrastive Learning for Spatial Transcriptomics☆13Apr 8, 2025Updated 10 months ago
- We propose SpatialCVGAE, which uses multiple variational graph autoencoders with different initializations to simultaneously generate cor…☆13Jun 24, 2025Updated 8 months ago
- Masked adversarial neural network for cell type deconvolution (MACD) in spatial transcriptomics data☆14Jun 16, 2025Updated 8 months ago
- SpaDiT: Diffusion Transformer for Spatial Gene Expression Prediction using scRNA-seq☆25Dec 12, 2025Updated 2 months ago
- A self-supervised learning method with Vision Transformer as backbone network for resolution enhancement in spatial transcriptomics.☆10Aug 25, 2025Updated 6 months ago
- We propose STG3Net, a novel method designed to integrate multiple SRT datasets and correct batch effects.☆14Aug 8, 2024Updated last year
- [Advanced Science 2025] SpaBatch: Deep learning-based cross-slice integration and 3D spatial domain identification in spatial transcripto…☆18Nov 27, 2025Updated 3 months ago
- [PLoS Computational Biology 2025] Domain-Adversarial Masked Autoencoder (SpaDAMA) for cell type deconvolution in spatial transcriptomics …☆11Nov 6, 2025Updated 3 months ago
- mclSTExp: Multimodal Contrastive Learning for Spatial Gene Expression Prediction Using Histology Images☆40Jan 10, 2025Updated last year
- scASDC is an attention enhanced structural deep clustering method for scRNA-seq cell clustering☆17Aug 8, 2024Updated last year
- Masked Graph Autoencoders with Contrastive Augmentation for Spatially Resolved Transcriptomics Data☆18Aug 7, 2024Updated last year
- ☆16May 27, 2024Updated last year
- High-Resolution Spatial Transcriptomics Using Histology Images with HisToSGE (Pathology Image Large Model, Transformers)☆20Jul 24, 2024Updated last year
- [Briefings in Bioinformatics 2025] A GCN and pathology image large model-based method to predict single-cell resolution spatial gene expr…☆25Dec 1, 2025Updated 3 months ago
- Deep Clustering Representation for Spatially Resolved Transcriptomics Data via Multi-view Variational Graph Auto-Encoders with Consensus …☆15Jun 24, 2025Updated 8 months ago
- Pretrained-Guided Masked Conditional Diffusion Models for Microbiome Data Analysis☆14Aug 7, 2024Updated last year
- Content for a 5 day mini-course on using R for Pharmacometrics☆13Aug 10, 2015Updated 10 years ago
- Tree-Invent: A novel molecular generative model constrained with topological tree☆13Jul 26, 2023Updated 2 years ago
- Coding and data materials for the Event Fund AI for Drug Discovery Course☆10Nov 21, 2022Updated 3 years ago
- ☆10Apr 22, 2024Updated last year
- This repository contains a QSAR model that predicts the ability of a chemical compound to inhibit the gene associated with Alzheimer's, B…☆11Oct 1, 2021Updated 4 years ago
- VenomPred 2.0 API☆11Feb 4, 2026Updated last month
- Workshops on Computational Biology organized by our lab☆10Mar 25, 2024Updated last year
- When you face some problem in drug discovery, just delete☆12Aug 3, 2024Updated last year
- Discriminator for Model Docking☆11Dec 20, 2024Updated last year
- App for serotonergic targets☆12Jan 8, 2026Updated last month
- [AAAI 2024] Binding-Adaptive Diffusion Models for Structure-Based Drug Design☆20Mar 31, 2024Updated last year
- Data repository for pkasolver☆12Mar 28, 2022Updated 3 years ago
- Data and code required to reach the main conclusions of the fastsmcg paper☆10Sep 19, 2023Updated 2 years ago
- Analyse metabolic stability predictions using SHapley Additive exPlanations.☆11Jul 26, 2023Updated 2 years ago
- ☆11Aug 13, 2025Updated 6 months ago
- For my midterm project of the Machine Learning Zoomcamp, I decided to work in the Open Bioinformatics Research Project proposed by Data P…☆10Nov 2, 2021Updated 4 years ago
- Snippets for common computer-aided drug design tasks☆10Oct 17, 2017Updated 8 years ago
- ☆13Oct 9, 2024Updated last year
- Tutoriales de Quimioinformática aplicada al diseño de fármacos☆19Mar 28, 2025Updated 11 months ago
- ☆15Apr 24, 2025Updated 10 months ago
- ☆13Apr 15, 2024Updated last year
- Enhanced Thompson Sampling☆12Apr 14, 2025Updated 10 months ago
- In process work on active learning tutorials☆10Feb 19, 2024Updated 2 years ago