Intel-HLS / BIGstackLinks
☆12Updated last year
Alternatives and similar repositories for BIGstack
Users that are interested in BIGstack are comparing it to the libraries listed below
Sorting:
- Falcon Accelerated Genomics Pipelines☆15Updated 6 years ago
- SneakySnake is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU arch…☆54Updated 2 years ago
- Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository☆34Updated last year
- Genomics datastructures using Apache Arrow☆20Updated 5 years ago
- LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.☆30Updated 3 years ago
- Optimization of a Haplotype PairHMM class for GPU processing☆24Updated 9 years ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Updated 2 years ago
- ☆20Updated 10 years ago
- Accelerated genomics workflows in the Workflow Description Language☆35Updated last week
- Accelerated kernel library for genomics☆109Updated 6 months ago
- Exercises for training scientists to perform some RNA-seq analyses.☆11Updated 6 years ago
- Parallel read alignment and variant calling using MapReduce☆18Updated 6 years ago
- ☆15Updated 8 years ago
- CWL for GDC DNASeq workflows☆23Updated this week
- Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metag…☆17Updated last year
- ☆51Updated 3 years ago
- This repository contains Jupyter Notebooks containing GATK Best Practices Workflows☆26Updated 6 years ago
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆28Updated last year
- Ressources for Boinformatics Trainings☆12Updated 2 years ago
- Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python☆21Updated 2 years ago
- ☆12Updated 3 years ago
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆45Updated 2 years ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- Deep Variant as a Nextflow pipeline☆30Updated 5 years ago
- Shouji is fast and accurate pre-alignment filter for banded sequence alignment calculation. Described in the Bioinformatics journal paper…☆18Updated 6 years ago
- genomics toolbox that supports both graphical and command-line execution☆15Updated last year
- ☆26Updated 5 years ago
- ☆36Updated 9 months ago
- Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices☆11Updated 5 years ago
- G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.☆70Updated 3 years ago