Intel-HLS / BIGstack
☆12Updated 3 months ago
Related projects: ⓘ
- Falcon Accelerated Genomics Pipelines☆15Updated 4 years ago
- Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository☆31Updated 3 years ago
- SneakySnake is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU arch…☆47Updated last year
- LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.☆26Updated last year
- ☆15Updated 7 years ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆37Updated last year
- ☆20Updated 8 years ago
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆27Updated 3 months ago
- Optimization of a Haplotype PairHMM class for GPU processing☆24Updated 7 years ago
- ☆10Updated this week
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 7 years ago
- Genomics datastructures using Apache Arrow☆20Updated 3 years ago
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆14Updated last year
- Accelerated kernel library for genomics☆103Updated last month
- Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metag…☆11Updated 2 weeks ago
- micro-read Fast Alignment Search Tool☆20Updated 5 years ago
- Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a sing…☆27Updated 4 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆16Updated last month
- CUDASW++4.0: Ultra-fast GPU-based Smith-Waterman Protein Sequence Database Search☆28Updated last week
- slow5lib is a software library for reading & writing SLOW5 files.☆42Updated this week
- Readshift: A method to shift high-quality NGS datasets into noisy datasets☆0Updated 5 years ago
- Source code for the software implementation of SeGraM proposed in our ISCA 2022 paper: Senol Cali et. al., "SeGraM: A Universal Hardware …☆12Updated last year
- Ansible Playbook for usegalaxy.org☆30Updated this week
- RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genome…☆42Updated last week
- Intel lab's open sourced data science framework for accelerating digital biology☆36Updated 2 weeks ago
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆41Updated last year
- ☆25Updated 3 years ago
- A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043☆66Updated last month
- Nextflow language support for Visual Studio Editor☆25Updated this week
- A collection of publications on comparison of high-throughput sequencing technologies.☆26Updated 4 months ago