A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation
☆29Apr 11, 2026Updated last month
Alternatives and similar repositories for MicroscopyForBeginnersReferenceGuide
Users that are interested in MicroscopyForBeginnersReferenceGuide are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Apr 20, 2026Updated 3 weeks ago
- napari widgets for start-to-finish batch processing☆15Apr 1, 2026Updated last month
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 5 months ago
- A napari plugin to analysis point spread functions.☆12Apr 27, 2026Updated 3 weeks ago
- Segment images utilizing pre-trained neural networks as feature extractors☆52May 11, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A fully scalable robust image feature extraction library.☆28Updated this week
- A minimal dependency napari plugin giving access to scikit-image functions☆23Mar 26, 2026Updated last month
- A napari plugin to view and edit layer metadata☆13May 1, 2026Updated 2 weeks ago
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆19Apr 8, 2025Updated last year
- ☆25May 16, 2023Updated 3 years ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Apr 23, 2026Updated 3 weeks ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆63Oct 27, 2024Updated last year
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Oct 30, 2017Updated 8 years ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- 1d plotting in napari-based canvas.☆25Apr 30, 2026Updated 2 weeks ago
- Generate multifunctional and macro recordable GUIs from Python classes☆45Apr 2, 2026Updated last month
- Evaluating the quality of a cell segmentation method without reference.☆13Jul 26, 2025Updated 9 months ago
- 🔬 MCP server for AI-powered napari control. Connect Claude, ChatGPT, Cursor, and other LLMs to napari for interactive image analysis. Pe…☆33Mar 25, 2026Updated last month
- VISION is a sophisticated software tool specifically designed to analyze and process biological and microscopic images.☆10Jul 25, 2024Updated last year
- Course on Deep Learning for imaging using PyTorch☆14Feb 2, 2022Updated 4 years ago
- StarDist plugin for napari☆39Aug 24, 2024Updated last year
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 3 years ago
- ☆15Jul 29, 2022Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ilastik plugin for napari☆15Mar 2, 2026Updated 2 months ago
- Denoising via adaptive binning.☆13Jan 6, 2026Updated 4 months ago
- An introduction to bioimage analysis - http://bioimagebook.github.io☆76Feb 5, 2026Updated 3 months ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Apr 13, 2026Updated last month
- Dataset EXploration & Processing☆33May 11, 2023Updated 3 years ago
- An introduction to OME-Zarr for big bioimaging data☆26Updated this week
- Accurate and efficient spot detection for microscopy data☆125Feb 5, 2026Updated 3 months ago
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆91May 6, 2026Updated last week
- A plugin to read whole slide images within napari.☆21Nov 24, 2025Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆15Updated this week
- some useful function to get Label from ROIs and vice versa , and more!☆11May 3, 2023Updated 3 years ago
- ☆18Oct 12, 2019Updated 6 years ago
- GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets☆76May 4, 2026Updated 2 weeks ago
- Multiple file format reading directly into napari using pure Python☆38Oct 15, 2025Updated 7 months ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆196Updated this week
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 3 years ago