A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation
☆29Jun 16, 2026Updated last month
Alternatives and similar repositories for MicroscopyForBeginnersReferenceGuide
Users that are interested in MicroscopyForBeginnersReferenceGuide are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated 2 weeks ago
- napari widgets for start-to-finish batch processing☆15Jun 1, 2026Updated 2 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 8 months ago
- A napari plugin to analysis point spread functions.☆11Apr 27, 2026Updated 3 months ago
- A fully scalable robust image feature extraction library.☆29Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Real-time feedback control microscopy for automation of optogenetic targeting☆16Jul 13, 2026Updated 3 weeks ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Jul 6, 2026Updated last month
- Segment images utilizing pre-trained neural networks as feature extractors☆52Jul 3, 2026Updated last month
- ☆24May 16, 2023Updated 3 years ago
- A napari plugin to view and edit layer metadata☆13Updated this week
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆19Apr 8, 2025Updated last year
- Automated batch processing of cell and tissue microscopy image data in Napari☆22Updated this week
- ☆26Updated this week
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆31May 28, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆66Oct 27, 2024Updated last year
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆57Nov 13, 2025Updated 8 months ago
- 1d plotting in napari-based canvas.☆25Updated this week
- Generate multifunctional and macro recordable GUIs from Python classes☆46Updated this week
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Oct 30, 2017Updated 8 years ago
- Evaluating the quality of a cell segmentation method without reference.☆13Jul 26, 2025Updated last year
- ☆15Apr 1, 2026Updated 4 months ago
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆98Updated this week
- StarDist plugin for napari☆40Aug 24, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ilastik plugin for napari☆15Mar 2, 2026Updated 5 months ago
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 4 years ago
- Denoising via adaptive binning.☆14Jan 6, 2026Updated 7 months ago
- ☆15Jul 29, 2022Updated 4 years ago
- An introduction to bioimage analysis - http://bioimagebook.github.io☆76Feb 5, 2026Updated 6 months ago
- VISION is a sophisticated software tool specifically designed to analyze and process biological and microscopic images.☆10Jul 25, 2024Updated 2 years ago
- MultiModal Big Image Data Sharing and Exploration☆20Jan 13, 2023Updated 3 years ago
- A plugin to read whole slide images within napari.☆21Nov 24, 2025Updated 8 months ago
- GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets☆79Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- some useful function to get Label from ROIs and vice versa , and more!☆11May 3, 2023Updated 3 years ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated last year
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆200Updated this week
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 3 years ago
- Conda Environment MAnager, a library to execute code in isolated environments.☆24Updated this week
- Multiple file format reading directly into napari using pure Python☆38Oct 15, 2025Updated 9 months ago
- ☆18Oct 12, 2019Updated 6 years ago