COBA-NIH / MicroscopyForBeginnersReferenceGuide
A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation
☆27Updated 3 weeks ago
Alternatives and similar repositories for MicroscopyForBeginnersReferenceGuide:
Users that are interested in MicroscopyForBeginnersReferenceGuide are comparing it to the libraries listed below
- A napari plugin for zarr backed OME-NGFF images☆33Updated 3 weeks ago
- A 3D interactivity toolbox for napari☆34Updated this week
- ☆17Updated last week
- ☆29Updated last year
- Basic example of using OME-Zarr in a Nextflow pipeline☆16Updated 5 months ago
- ☆14Updated last week
- A minimal Python package for reading OME-Zarr (meta)data☆25Updated 2 weeks ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆21Updated last month
- native Python dataclasses for the OME data model☆56Updated last week
- ☆49Updated 6 months ago
- Resources for teaching/preparing to teach bioimage analysis☆56Updated 2 weeks ago
- 1d plotting in napari-based canvas.☆26Updated last week
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 8 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆44Updated 2 weeks ago
- A minimal dependency napari plugin giving access to scikit-image functions☆17Updated last week
- Use ImageJ functionality from napari☆31Updated 3 weeks ago
- ☆12Updated last week
- A napari plugin for clustering objects according to their properties.☆83Updated last week
- ☆22Updated last year
- ☆23Updated last week
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆20Updated 3 weeks ago
- Browse your OMERO database from within napari.☆36Updated 2 weeks ago
- ☆24Updated 2 weeks ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 5 months ago
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Updated 7 years ago
- ☆20Updated last year
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated 2 years ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated 3 weeks ago
- ilastik plugin for napari☆14Updated last year
- GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets☆66Updated 2 weeks ago