COBA-NIH / MicroscopyForBeginnersReferenceGuideLinks
A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation
☆29Updated 2 months ago
Alternatives and similar repositories for MicroscopyForBeginnersReferenceGuide
Users that are interested in MicroscopyForBeginnersReferenceGuide are comparing it to the libraries listed below
Sorting:
- A napari plugin for zarr backed OME-NGFF images☆42Updated last month
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆18Updated this week
- A 3D interactivity toolbox for napari☆37Updated 6 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆25Updated 10 months ago
- ☆41Updated 2 weeks ago
- A napari plugin for clustering objects according to their properties.☆88Updated this week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆20Updated 2 months ago
- Resources for teaching/preparing to teach bioimage analysis☆58Updated last week
- ☆14Updated 2 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆101Updated last week
- 1d plotting in napari-based canvas.☆25Updated this week
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated last month
- Browse your OMERO database from within napari.☆40Updated last week
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last month
- ☆51Updated 8 months ago
- native Python dataclasses for the OME data model☆65Updated last week
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆48Updated last week
- Linking napari layers with Matplotlib plots☆42Updated last week
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Updated 8 years ago
- Track and lineage visualization with btrack and Napari☆45Updated 3 months ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Updated 4 months ago
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆37Updated last week
- StarDist plugin for napari☆38Updated last year
- ☆20Updated 8 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated 6 months ago
- Process and analyze surfaces using vedo in napari.☆25Updated last year
- python tools for BigDataViewer☆22Updated last year
- ☆36Updated last year
- Basic example of using OME-Zarr in a Nextflow pipeline☆19Updated 6 months ago
- ☆33Updated 8 months ago